| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0124 |
|---|
| Symbol | |
|---|
| ID | 5711747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 122240 |
|---|
| End bp | 122824 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641266019 |
|---|
| Product | intracellular protease |
|---|
| Protein accession | YP_001531474 |
|---|
| Protein GI | 159042680 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0693] Putative intracellular protease/amidase |
|---|
| TIGRFAM ID | [TIGR01382] intracellular protease, PfpI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGA GACGGGAGAC CGACATGACC GAAATCACCA AGGCACGCAT TCTCATCATC
GCCACCCACG GCTTCGAGCA ATCGGAACTG GAGGTGCCCC GGGACAAGCT GCGCGATGCC
GGGGCACAGG TCCATGTGGC CAGCCCCGAC GGCAACGAAA TCAAGGGGTG GGACGGCGAC
GGCTGGGGCC GGATGGCCGA GGTCGACCTG CGGATCGAGG ACGCGGACTC CACCCAATAT
GACGCGCTGG TGCTGCCCGG CGGGCAGATC AACCCGGACA TCCTGCGCCT TGACCCGGCG
GCTATTGCCC TGATCCAGGC GTTCCGCGAC CGGGACCGGC CCGTTGCCGC GATTTGCCAC
GCGCCCTGGC TGCTGATCGA GGCGGGGCTG GTGGCCGGGC GCGAGGTGAC CTCCTGGCCC
TCCTTGCGCA CGGATCTGGC CAATGCCGGG GCACAGGTGG TGGATGTGCC CGTGGCGCGC
GACCGCGGGC TGATCACATC GCGAAATCCC GATGATTTCG ACGCCTTCGT CGCAGCGATC
ATCGAAGAGG TAGAGAAGGG TCAGATTCGG GCTGACGCAG CCTGA
|
|---|
| Protein sequence | MDTRRETDMT EITKARILII ATHGFEQSEL EVPRDKLRDA GAQVHVASPD GNEIKGWDGD
GWGRMAEVDL RIEDADSTQY DALVLPGGQI NPDILRLDPA AIALIQAFRD RDRPVAAICH
APWLLIEAGL VAGREVTSWP SLRTDLANAG AQVVDVPVAR DRGLITSRNP DDFDAFVAAI
IEEVEKGQIR ADAA
|
|---|
| |