| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0100 |
|---|
| Symbol | |
|---|
| ID | 5711723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 96999 |
|---|
| End bp | 98882 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641265995 |
|---|
| Product | putative transposase |
|---|
| Protein accession | YP_001531450 |
|---|
| Protein GI | 159042656 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.733769 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGTCGGG AAGACATTCC GTTGGAGCCC TATAAAAATT CGTATCTGGT AGCGGTTCAG
GACCTTCCCG ACTGTCTCCG TTTTAGCCTT TTGAATGCTG AGCTGGAGCA CTTGCATCTT
TCCCCTGGCA CTTACGACGC GGCGGCGCAT GAGGCGTTTT TTGAGGCGTC GCCGTCGCGG
CGGGACCGGG CGGAGCGGCG GGCGGCGGTG GCGCGGGTGC TGGTGGCGTT GGGGCCGGGC
GTGCGCTGGT CGGACCGGCT GCGGATCGTG CATGAGAAGT TCGGCGCGAA AGGGCTCTCA
AAGCCCTGTT TGAGGGAGAT TTTACGCCGC GTCGAAGGGA TCGATCCGAT CAACTTCGCG
CCCGCGCTGC TGGACGAGTA CAAGGGGACG ACCAAACGGG CCGAGTTCAC TGATGAAGCC
TGGCGGTTCT TCCTGACACA GATCCGGGAC GCGGCTCCGG AATGGCCGCT TGCAGAAGCC
TGGCGGCGCA CGCGCGACGC GGGCCGCGAG CTGGGCTGGA AAGTGCCTCC CTACATCACC
GTCTACAGGC GGTGGATGGA GCTGAGCGAG GTGCAGAAAC TGCACGCCCG CCAAGGGACC
GCAGAGACCG CGAAAAACCT GTCCATCCCG GTTCAGCGAG ACAAGACAAG CCTGTTGGCG
CTGGACGTGG TGTCGCTCGA CGGTCGCGAA ATCGATGTGT TCGTGGACTG GGGCGACGGA
AAAGCCGTGC GCCCGGTCAT GCTGGTGCTG GTCGATGTCA GCTCAAACGC GGTTCTCGAC
TTCGAGCTTG CCCCGTCGGA GAACGCAACA GCCACCGTGC GGCTGATCAA GCGAGCCTGC
GCAAACCATG GAATATTCGA CAAGCTCTAT ACCGATAACG GTTCGGCCTT TGCCGGGCAC
AAGGTGGCGG GCGGGACGCC GCATCGCTTT CGCAATGGCG TCGCGAAGGG CGTCCAGCCG
ATGGGAATTT GCGAGGTCCT GGGGATCGAT GTGCAGTTTG CCCTGCCGGG TAATGCGCAG
GCGAAGATCG CCGAGCGTCT CTACGCGATC ATGTCGCGCT CGGACGACGA CGGGCCAGAC
TTCAAGGGTG CGCATACCGG TCACAAACCG GGTGCCCGAC CCAATTCGGA GACCAATCCT
ATCCCGGTCG ATGAATGCAA GGCACTGCTG GCCCGTGGCG TCAGACGTCT CAATCGCGAG
GAAGGACGTC GGAACCAGGG CGCGCAAGGC CGCTCATACG ATCAGGTGCT GCGCGACGGG
CTCACGAAGC GCGCGGAGCT TGGGCGTCCG GTACGGTATC CGACTAAGGA CCAGCTCTAT
CGCGCCGGTT TGATCTGGAC GCCTGCGACG GTCGATAGAA ACACGCAGAT CAAGGTCGAT
CACTGGACCT ATGGCGGGCC GGAAACGCAA GAGGCCTTGG CACCCTACCG GCGCGGCGGC
GCGAAGAACC TCAAGGGCGG AACGAAGATC CTCCTGGCCC GTGACCCAGA CGATCTGAGC
GCACCGGCAA TCGCTTATGA TGCGGAGCGA AATTTCATCT GCGACCAGAT CGAGCCGGTC
AGGCGTGGGG ATTACAACAG CTCCGATGGC ATTCGGGAGG CAGCGCGCAA CCGGAAGGCC
GCAAGGGATG CGGCGCGCAA GGCCGAGGAG GCAAACGCCT ACCTGGAGGA TGCGGAATAT
CTCCGAGCCA AGGCCGCCCT GGACGCCGCC TCACGGGAGG ACGACATGCC GCCGCCCGCG
CCGGGGAAGG TGGTGGGCGC GCGTTTCGGC GGGCCGCTCA AAGCCGCCAA GCCGAAGCCT
GAAACCGATA ACGAAGCTGA AGTTTTGAAG CAATTCGACC GCGTCACCGG GTTCGATCCG
GTGCGGGTCC TAAGGGGCCA GTGA
|
|---|
| Protein sequence | MRREDIPLEP YKNSYLVAVQ DLPDCLRFSL LNAELEHLHL SPGTYDAAAH EAFFEASPSR
RDRAERRAAV ARVLVALGPG VRWSDRLRIV HEKFGAKGLS KPCLREILRR VEGIDPINFA
PALLDEYKGT TKRAEFTDEA WRFFLTQIRD AAPEWPLAEA WRRTRDAGRE LGWKVPPYIT
VYRRWMELSE VQKLHARQGT AETAKNLSIP VQRDKTSLLA LDVVSLDGRE IDVFVDWGDG
KAVRPVMLVL VDVSSNAVLD FELAPSENAT ATVRLIKRAC ANHGIFDKLY TDNGSAFAGH
KVAGGTPHRF RNGVAKGVQP MGICEVLGID VQFALPGNAQ AKIAERLYAI MSRSDDDGPD
FKGAHTGHKP GARPNSETNP IPVDECKALL ARGVRRLNRE EGRRNQGAQG RSYDQVLRDG
LTKRAELGRP VRYPTKDQLY RAGLIWTPAT VDRNTQIKVD HWTYGGPETQ EALAPYRRGG
AKNLKGGTKI LLARDPDDLS APAIAYDAER NFICDQIEPV RRGDYNSSDG IREAARNRKA
ARDAARKAEE ANAYLEDAEY LRAKAALDAA SREDDMPPPA PGKVVGARFG GPLKAAKPKP
ETDNEAEVLK QFDRVTGFDP VRVLRGQ
|
|---|
| |