Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0061 |
Symbol | |
ID | 5711683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 60992 |
End bp | 62323 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641265955 |
Product | amidase |
Protein accession | YP_001531411 |
Protein GI | 159042617 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.222867 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0000105372 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGACAAAA GCTGGCTGAC GGCAAGCGCG GCGGCGCAGG GGCGCGCGAT CGCGGAGGGC ACCCTCGACC CCGTGGCCCT GACCGAGGCC TATCTTGACA AGATCGCCTC GCGCGCCGAA AGCCCGCGCA TCTATGCCCG CACCACGCCC GACCGTGCCC TGTCCGAGGC GATGGCCGCC CATGATCGCG CCAGGTCGCA GACCCGGCAC GGGCCGCTGG ACGGGGTGCC GATCTCGTGG AAGGACCTGT TCGACACCGC TGGCGTGGCC ACGGAGTCCG GCACGGCGCT CCTGAAGGGC CGCACCCCCG ACCGCGACGC GGAGGTGCTG GCCAACGCCA CCGCGGCGGG GCTCGTCTGC CTCGGCAAGA CGCATCTGTC GGAGCTGGCC TTCTCGGGGC TTGGCCTCAA CCCGATCACC GCCACCCCGC CCAACATCAA CGACCCCGGT GCGGTGCCCG GCGGTTCGTC CTCGGGCGCC GCGGCGTCGG TGGCCTTCGG GCTGGCCGCC GCCGGGATCG GCTCGGACAC TGGCGGGTCC GTGCGCATCC CCTCGGCCTG GAACGATCTC GTGGGGCTGA AGACAACCTC CGGCCTGTTG TCGCTCGAAG GCGCCGTGCC GCTCGCCAGC GCCTTCGACA CGGTCGGCCC CCTCACCCGC ACGGTGGAGG ACGCGGCGCT CCTGCTCGGC GCCCTCGGGG GCACGAAAGC CCCCGACCTG CGCGGCGCAA CCCTCACAGG CACCCACCTC GCCGTCCTGC GCACCGGAGC GTTCGAAGAC ATCCGGCCCG AGCCCGAGCA GGCCTTCGCG GCCGCCGTGG CGCGTCTGGC CGAGGCGGGC GCGCAGATCA CCGAGTTGCA CGCCCCCGAA GTGGACGAGG CGCTTGCACT CTCCGGCGTG CTCTTTGCCA CCGAAGCCTA CGGCATCTGG AAGGACGTGA TCGAGGCCGC CCCGGAAAAG ATGTTCCCCC CCATCCTCGA CCGCTTCCGC GGCGGGCGGG ACTACGATGC CCCGGCCTAT GTGGCGGGCT GGCGCAAGCT GGTCGAATTG CGCGCGGTCT GGGCGGACCG CACCCGGGCC TTCGACGGCG TGCTGCTGCC CACCGCCCCG ACCCTGCCGC CCAATGTGGA CCGGCTCCTG TCGGAAAAGG CCTATTTTGT CGAGGAAAAC CTGCTCGCCC TGCGCAACAC GCGCATCGGC AACCTGATGG GGGTCTGCGC GCTGAACCTG CCCACGGGCA CCCCCTCCTG CGGGCTGTCG ATCATGGGCC AACCCTTCGG CGAGGCCGCC CTCCTGCGGC TCGGGGCGGC GGCGGAGGCC GCGCTGACCT GA
|
Protein sequence | MDKSWLTASA AAQGRAIAEG TLDPVALTEA YLDKIASRAE SPRIYARTTP DRALSEAMAA HDRARSQTRH GPLDGVPISW KDLFDTAGVA TESGTALLKG RTPDRDAEVL ANATAAGLVC LGKTHLSELA FSGLGLNPIT ATPPNINDPG AVPGGSSSGA AASVAFGLAA AGIGSDTGGS VRIPSAWNDL VGLKTTSGLL SLEGAVPLAS AFDTVGPLTR TVEDAALLLG ALGGTKAPDL RGATLTGTHL AVLRTGAFED IRPEPEQAFA AAVARLAEAG AQITELHAPE VDEALALSGV LFATEAYGIW KDVIEAAPEK MFPPILDRFR GGRDYDAPAY VAGWRKLVEL RAVWADRTRA FDGVLLPTAP TLPPNVDRLL SEKAYFVEEN LLALRNTRIG NLMGVCALNL PTGTPSCGLS IMGQPFGEAA LLRLGAAAEA ALT
|
| |