| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0032 |
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| Symbol | kdtA |
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| ID | 5711654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 35239 |
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| End bp | 36555 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641265926 |
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| Product | three-deoxy-D-manno-octulosonic-acid transferase domain protein |
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| Protein accession | YP_001531382 |
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| Protein GI | 159042588 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1519] 3-deoxy-D-manno-octulosonic-acid transferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.501952 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00172712 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGCCG CCTTTCCCCG CTCCGCCGCC CTGTGGCTCT ACCTTGCGGT GAACGCGCGG
CTCACCGGCT GGGCCGAGCG CAAGATCGCC GAGCGTCGCG AGGCCGGCAA GGAAGACCCC
GACCGCTACG GCGAACGTCT CGGGCGCCCC GGCCTGCCCC GGCCCGACGG CCCGCTGATC
TGGATGCACG CCGCCAGCGT GGGCGAGGCG CTCTCGGTGC AGGAACTGAT CCGCCGTCTG
CGCGAGGAAC GCCCCGACAC CACGATCCTG CTGACCACGG GCACCCGCAC CTCCGCCGAA
CTGCTGGCCA CCCGCCTGCC CCAGGGCGCG ATCCACCAAT TCGCGCCCGT GGACACCAAA
CCGGCCATCG CGGGCTTTCT CGACCACTGG AAACCGGACC TCGCCATCTG GATCGAGAGC
GAGCTCTGGC CCCGCATGAT CCACGACACC GCCGACCGGG GCATCCCGAT GATGCTGATG
AATGCGCGCA TGTCGCCCGA CAGCTACCGG CGCTGGCGCT GGATGCGCGG CCTGTCCCAC
GCCCTGCTGT CGCGGTTCCG GCGCATCCTG GCGCAGGACA AGGACACCAT GCGCCTGCTC
GCCCGGCTCG GCGCGCCCCA GGACCGCCTC CGCACCATCG GCACCCTGAA GGAAGGCGCG
CAGCTCCTAC CCTACTCCCA GACCCAGTAC GCCTCCTTCC TCGACGAGAT CGACGGCCGC
CCCCTCTGGC TCGCCTCCTC CACCCATGCG GGCGAGGAGG AGATGATGAG CGACGCGCAT
CGCAGCCTCG TGCGCCGGAT GCACCGGCTC CTGATGGTGC TCGTGCCCCG CCACCCCGAG
CGCGGCCCCG AGATCGCCCG CGCCCTGCGC GCCGAAGGCT GGGAGGTCGC TTTGCGCAGC
GACGACGACA GCGTCGATCT CGACACCCAG ATCTATGTCG CCGACACCCT GGGCGAGCTG
GGCCTGTGGT ACCGCCTCGC CCCGGTCAGC TTCATCGGCG GCTCCCTCAC CGAGGTCGGC
GGCCACAACC CGTTCGAGCC CGCGGCCCTC GGCTCCGCCA TCGTCCACGG GCCCCATGTG
TTCAACTTCG CCGATATCTA TGACCGGCTG ACCCAGGCCG GCGGCGCGCG GCAGGTGGAC
GGGCCGGTCA CGCTGGCCGA GACCATCGAC GACCTGCTGG CGCCGCACAA CGCCGCCGCC
ATGGCCCATG CCGCGTGGGA GGTCTCGTCC CGTGGCGCGC AGGTCACCGA CCTGGCCCTC
TCCGAAGTGC TCGACCAGCT CGACGGCGCC GAGCCCGCCG CGCGCAAAGC CCCCTGA
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| Protein sequence | MSAAFPRSAA LWLYLAVNAR LTGWAERKIA ERREAGKEDP DRYGERLGRP GLPRPDGPLI
WMHAASVGEA LSVQELIRRL REERPDTTIL LTTGTRTSAE LLATRLPQGA IHQFAPVDTK
PAIAGFLDHW KPDLAIWIES ELWPRMIHDT ADRGIPMMLM NARMSPDSYR RWRWMRGLSH
ALLSRFRRIL AQDKDTMRLL ARLGAPQDRL RTIGTLKEGA QLLPYSQTQY ASFLDEIDGR
PLWLASSTHA GEEEMMSDAH RSLVRRMHRL LMVLVPRHPE RGPEIARALR AEGWEVALRS
DDDSVDLDTQ IYVADTLGEL GLWYRLAPVS FIGGSLTEVG GHNPFEPAAL GSAIVHGPHV
FNFADIYDRL TQAGGARQVD GPVTLAETID DLLAPHNAAA MAHAAWEVSS RGAQVTDLAL
SEVLDQLDGA EPAARKAP
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