Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_2471 |
Symbol | |
ID | 8420333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 2831894 |
End bp | 2833075 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 645039074 |
Product | DNA polymerase III, beta subunit |
Protein accession | YP_003199331 |
Protein GI | 258406589 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0000269887 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000186716 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTAGTAA GAATCAGTAA AGAACAAGTT CTCTCTGGAT TTCAAAAGGC AGCCGGCATC ATCCCCATGA AAACTGGAGC GGCTTTTTTG CGCACCATTT GGCTTGAGGC CAAAGACAAC CACCTCACGA TCATGTCCAC GGACTCCAAA CTCGAATTCA GCGGCAGTTA TCCGGCCCAG GTCGAAACTC CCGGCTTGAT CGGAGTCCCA GGGAAAAAAT TCTACGACCT GTTCCGGAAA CTTCCTCCCG GCGAGATCAC CCTGCATGCA GCGGACAGCG AGGACCACGT CCTTTTGGAG CAGGGAAGGC GCAAATACAA ACTCCCGACC AACGACGCCT CATGGTTTCA ACCTTTTTCC GCCTTTCCCG AGGATGAGGC GGTGCTGTGG TCCGGGGATT TCCTCAAGGA AATCATCAAC CGTATCACGT ATTGCGTAGC GGACGACGAA AGCATGAACG GCATGAATTG CCTCAAGATC ACCCCTTGGC CCAACAGCGA GGCTGTGGAG GCCTGTGGTC TCAATGGGCA CCAATTCGCG CTGATGCGCT TTTTAAATCC CGATATCCAT GCTATCTTGC CTCAAGACGA TGAGGGGGAG GACAGCGGCA TTCTCATCGC GAAAAACTAC CTCCTGGAAC TCAAAAAATG GCTCAGCAGC GATGAGATCT ATTTCACCAT CGATCAAAAG CGCCTTTTTT TCACCAACGG CAAGAAAAAC GAAATTTTCA GTCTCCCGCT GAGTACGTAT AAATTTCCCA AGTATGAAAC TTTCTTATCA AATTTCCAGA ACGAAACCTC GAAGCTGAAC ATCGGGCGCG ACGAGATCCT GGATGCCCTT GAGCGGGTGG CCCTGTTTAA CACCGAAAAT CAGCGCTGCT CCTACTTCGT TTTTGATTCC ACCGAAATGA TCGTGTATAG TCAGGGGCAG GAAACAGGGG AAGCGACGGA ATCCTTGGGC GTTGAGTACA GCGGGGATCT CAAGAAAATC GCTTTTCCCA CAACCACTCT GATCGAAGTC CTCTCTCATT TCCAATCCGA AATGATCACC TTCGAATTCA CCGGGGTTGA AGGCCCTTGT AAGATCACTG GGAAAGAGGA TTCAGGCTAT CTCGTGGTGG TCATGCCCAT GCATGTCGCC GAGGAAACCT ATTACGTCGA AGAAGAAACG GAAAACGACT AA
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Protein sequence | MLVRISKEQV LSGFQKAAGI IPMKTGAAFL RTIWLEAKDN HLTIMSTDSK LEFSGSYPAQ VETPGLIGVP GKKFYDLFRK LPPGEITLHA ADSEDHVLLE QGRRKYKLPT NDASWFQPFS AFPEDEAVLW SGDFLKEIIN RITYCVADDE SMNGMNCLKI TPWPNSEAVE ACGLNGHQFA LMRFLNPDIH AILPQDDEGE DSGILIAKNY LLELKKWLSS DEIYFTIDQK RLFFTNGKKN EIFSLPLSTY KFPKYETFLS NFQNETSKLN IGRDEILDAL ERVALFNTEN QRCSYFVFDS TEMIVYSQGQ ETGEATESLG VEYSGDLKKI AFPTTTLIEV LSHFQSEMIT FEFTGVEGPC KITGKEDSGY LVVVMPMHVA EETYYVEEET END
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