| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2442 |
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| Symbol | |
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| ID | 8420302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2799006 |
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| End bp | 2800958 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645039043 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003199302 |
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| Protein GI | 258406560 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGCA ATCTGAACAA GCGCTTCTTT CAACCAGCGA TGATCGTCCT GATCTATGTG
CTTGTCGCCG GAGTCTGGAT CGTCTTTTCT GATTCCATTG TCGCCCAATT AGCGCCATCA
AGCCATTGGC GCACGACCCT CCAAAGCCTG AAAGGCCTTT TCTTTGTCGC CGGTACCGGC
ATTTTGCTCT ACGTCCTGAT CCGGGGATAT GCGGAAAGTC TGCGCCAAAA AGAGCGGCAC
AACCGTCTCA CCCAGCGCGC AGCCAAAGCC TGCAGTTGGG ACTGGGATAT CGAAGCAGAC
CGTTTCACCT GGGCCGGCGA CGTCTCCAGT TTTCTAACCG AAGGGGACGG CACCTCCCCT
TTGCCCCGGA CCTATCAAGA TGTGCTCCGG CACATTCATC CCGAAGACAT TCCGAACTTT
GAACGAGCGG TCCAGGAAAG CTTGCTGCGC GACCAGGAAC TCCACTTGGA ATTTCGCTGG
CAACGGGGCG CCAATACGCG GTGGTTTTTT GCCGTGGGCG AGGTGGAACG CGACCTCACG
ACGAACAAGC CCCAGCACTT GCGCGGCATC ATCCGCGATA TCACCCAACG CAAACAGGCA
GAGCAAGAAC TCGCCTATAA AAGCGAATGG GACGGTCTCA CCGGCCTGCT CAACCGTTCC
TTCTTTCTCA AGCGCCTGGA ACAGCTTTTC CAAACCCAGC GCCGCCTGGG GCACTGCTCC
TTTGCCGTCC TGCTTTTGGA CATCGACCGC TTCAGCCGAA TCAACGACAG CCTCGGACAC
TGGGTGGGCG ACGCTGTATT GCAGGAAGCC AGCCGCCGAT TGGCCAACTT TCTCTCTCCA
GCGGATTCCC TGGCCCGGCT GAGTGCCGAT GAATTCGGCA TCCTGCTCCA GGCCAGCAAC
GACCAGGACC AGGTCCTGAG AAGCGCCCAC CATATTCTCG AGGTCCTGAA AACCCCGATG
CACCTCTCTC CGCATGACAT CAATATCACG GCCAGTATAG GGGTGGTGAC CTGTTTCGAC
GCCAATCCTT ACAACAATCC GGAATATATT CTGCGCGATG CCGCCACAGC GATGCGCCAG
GCCAAACTCC AGGGCGGCGA CCAGATCGCC GCGTTCAAAA AAGCCCTGCA CACCCAAGCT
TTTGAAGCCC TGTCCCTGGA GAATCAGCTT CGAAAAAACC TCCGAGACCC GGCTCAACAG
GAACTCTTTC TGGCCTTCCA GCCCATCGTC GACCTGGGCA GCGGTGAGAT TGCGGGATTC
GAGGCCTTGA TCCGCTGGAG GCTGGCCGAC GGAACGGTCA TTCCGCCCAA TCGCTTTATT
CCCGTGGCTG AACAAAGCGG ATTGATCCAG CCGCTTGGCA AATGGGTCCT GGATTCGGCC
TGTGCGGCAC TGGCCGCATT GCGGGCGAAT GACCCCAATG CAGTTGACCA CATGCATGTC
AACGTCAATG TGTCCGCCCG CCAATTGGAA CAGCACGATT TTGTTCGCGA AATCAATGAA
CTGCTCCTGA TTCACAACCT GCCTGCCCAG ACCCTGCGTT TGGAACTCAC TGAGACCGTG
CTCATGGAGA ACGCCGCCCA GGTCCAGAAT TTCCTCGGCC AACTCCAGGA GATCGGCATC
GGAGTGGCGG TGGATGACTT CGGAACCGGA TATTCCTCGT TGAGCTATCT GCACCGTTTT
TCGATCAACA CCTTGAAAAT CGATTTGAGT TTTGTCCAAA GCGTTTTGAC CAACGAGCAC
AGCAAAGCCA TCACCCAGGC CATTATTGAT ATGGCCCAAT CCTTGAACAA AACTGTTGTC
GCTGAGGGCA TTGAAACGCA GGAACAGGCC GCCCTGATAG CAGCGATGGG ATGCCGGTAC
GCGCAGGGAT TTCTCTTCAG TTACCCCCTT GAGAAGGAAG CGCTTCCGCA ATTGCTCGAC
CAACAGCCCC TTGTGCCGAC CCCTCGGGAA TAA
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| Protein sequence | MQRNLNKRFF QPAMIVLIYV LVAGVWIVFS DSIVAQLAPS SHWRTTLQSL KGLFFVAGTG
ILLYVLIRGY AESLRQKERH NRLTQRAAKA CSWDWDIEAD RFTWAGDVSS FLTEGDGTSP
LPRTYQDVLR HIHPEDIPNF ERAVQESLLR DQELHLEFRW QRGANTRWFF AVGEVERDLT
TNKPQHLRGI IRDITQRKQA EQELAYKSEW DGLTGLLNRS FFLKRLEQLF QTQRRLGHCS
FAVLLLDIDR FSRINDSLGH WVGDAVLQEA SRRLANFLSP ADSLARLSAD EFGILLQASN
DQDQVLRSAH HILEVLKTPM HLSPHDINIT ASIGVVTCFD ANPYNNPEYI LRDAATAMRQ
AKLQGGDQIA AFKKALHTQA FEALSLENQL RKNLRDPAQQ ELFLAFQPIV DLGSGEIAGF
EALIRWRLAD GTVIPPNRFI PVAEQSGLIQ PLGKWVLDSA CAALAALRAN DPNAVDHMHV
NVNVSARQLE QHDFVREINE LLLIHNLPAQ TLRLELTETV LMENAAQVQN FLGQLQEIGI
GVAVDDFGTG YSSLSYLHRF SINTLKIDLS FVQSVLTNEH SKAITQAIID MAQSLNKTVV
AEGIETQEQA ALIAAMGCRY AQGFLFSYPL EKEALPQLLD QQPLVPTPRE
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