Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_2426 |
Symbol | |
ID | 8420286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 2777837 |
End bp | 2778934 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 645039027 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003199286 |
Protein GI | 258406544 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.54628 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000000883837 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACGCGG CCAGATACCG GGGCCCAGCG GCACTGCTTT TTATCCTCGG CCTGATGCTC GGAGGATGCT CTGAAACTCC TGTCGGGGCC GCCGGCAATG CGAACGCTAC CGCGCCTCAG GCGGTGGTCG TCGAAGAAAC CCCGGTCTGG ACCAACGCTT CCAGGCGCAG CTTTGCTGGC ACGGCCCAGG CCGGGGTGCA AACTCCACTG AGCTTTCGTG TCGAAGGGGA GATCACTCGC TTGCCGGTCA GCGCCGGCCA GAGAGTCCAG GCCGGATCTG TGGTCGCTGT GTTGGACGCA ACAGATTACC GGCTGCAGCG TCAGCAGCGA AGCGCGGATC TCGCCCAGGC CAAGGCTGGC CTGGACCAGG CCCGGGCATC CTATTTCCGG GTCCGTTCCC TGTACGAGGC CGGAAATGTT AGCACCCAGG AGTTGGACGA CGCCAAAGCG GCCTTCGAAA CGGCCCAGGC CCAGCTCCAG AAGGCTGAAA AGGCGGTGGC ATTCGCCCAA AAGCGGGTTG GCTATTGCCG TCTGGAGGCC CCGATTGCGG CCGAAGTCGT GCGTATCCCG GTCGAGATCC ACCAGAATGT GGCTGCAGGC CACCCCGTCG TCGTTCTTGC CAGTCAGGGG CCGCTGGAGG TCGAACTTGG CGTGCCCGAG TCCTTTCTTT CCCGGCTGCA TCGCGGGGAC AAGGCCAACG TCCGCTTCGA CGCCCAGCCT GAATCGGTGT ACTCGGCTAC GGTGACAGAA GTCGGCATCC AGGCCGGGCC GACAACCGCT TTTCCGGTCA CCGTCCGTTT GGACCAGCCC GCCCCTGGCC TGCGCTCCGG AATGGCCGCC AGCGTCACCT TCGTCGCCGC CTTGAAACGC CCATACATCG CTGTTCCCCC GCAGGCAGTC CGGGGACAGG AAAACCAGCC TACGATCTTT GTCTACCACC GCGATACAGG GCAGGTGGAA GAACGACCGG TGGTCACAGG AGAACTCGTG GCAGCAGGCC TCCAGATCTT CAAAGGAGTG TCGCCCGGTG AAACGATCGT CACGCGTGGC GTGCACCGTC TTCGCGACGG CGTTGCGGTC CGCCCCCTCT CTCAATAA
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Protein sequence | MNAARYRGPA ALLFILGLML GGCSETPVGA AGNANATAPQ AVVVEETPVW TNASRRSFAG TAQAGVQTPL SFRVEGEITR LPVSAGQRVQ AGSVVAVLDA TDYRLQRQQR SADLAQAKAG LDQARASYFR VRSLYEAGNV STQELDDAKA AFETAQAQLQ KAEKAVAFAQ KRVGYCRLEA PIAAEVVRIP VEIHQNVAAG HPVVVLASQG PLEVELGVPE SFLSRLHRGD KANVRFDAQP ESVYSATVTE VGIQAGPTTA FPVTVRLDQP APGLRSGMAA SVTFVAALKR PYIAVPPQAV RGQENQPTIF VYHRDTGQVE ERPVVTGELV AAGLQIFKGV SPGETIVTRG VHRLRDGVAV RPLSQ
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