Gene Dret_2425 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2425 
Symbol 
ID8420285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2776272 
End bp2777840 
Gene Length1569 bp 
Protein Length522 aa 
Translation table11 
GC content56% 
IMG OID645039026 
ProductNitrilase/cyanide hydratase and apolipoprotein N- acyltransferase 
Protein accessionYP_003199285 
Protein GI258406543 
COG category[R] General function prediction only 
COG ID[COG0388] Predicted amidohydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.48789 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000100435 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGAAGAAA GTCCGGAAAT CTTTGAACAC AAATTGAGTC TGCGCAATCT GCGCATCGAG 
GATTATGCGG ACCTGACGGA AATTATGGAT CGCGCTTACC GGGCCATGGA CGAGATCTGG
GAGCGCGACG AGATCCGCTC CATGATCACC CGTTTTCCCG AGGGCCAATT GTGCATCGAA
GACAACGGCA AGGTTGTGGC CGTAGCGCTG AGCCTGATCA TCGATTACGC CAAGTACGGC
AGCACACATA CCTACCAGGA CATCATCGGT GAAGGGTATC TCCGCAACCA CGACCCCAAT
GGGGATTACC TCTATGGTAT CGAGGTCTTT GTCCATCCGG ACTACCAGGG CATGCGTCTC
GGCCGCCGTT TGTATGACGG CCGCAAGGGG TTATGCGAAC AACTCAATTT AAAAGGCATT
CTCGTTGGCG GGCGCATCCC CGGTTACGGC CGGTACAGCC ACGAGATGTC GCCCCAGGAA
TACGTGACCC AGGTCAAAAA CAAGGAGTTG CACGATCCGG TGCTCTCCTT CCAATTGGCC
AATGATTTCC ACATCAAGAA GTTGATCAAG GGCTATCTGC CCATCGACGA GCGCTCCCAC
GGCTATGCGG TCCTGCTTGA GTGGAACAAT ATCTACTATG AGGAACAGCC GGAAATCCTG
AGCCAACGCA AAAGTTACGT CCGTCTCGGG GTAGTCCAGT GGCAGATGCG GCTGTTCGGC
TCCTTTGACG ATTTTCTGCA ACAGGTCGAA TTTTTTGTGG ACACTGTGGC CCGCTACCAG
GGCGATCTGA TTTTATTTCC CGAACTCTTC AATGCCCCGC TCATGGCCCG TTTCGACCAG
GAAGACGCCG CCGATGCCAT GCGCTCGCTG GCCGAATATA CCGAACCGCT GCGCGAGGAA
CTCATGCGCA TGGCCCTGGG GTACAACATC AACATCGTCT CCGGATCAGT TCCGGAATAC
CGGGACAACA AACTCTTCAA TGTCTCTTTT TTGTGCCGCC GCGATGGGAC CTGGGACACC
CAGTACAAAC TCCACATCAC CCCCGAAGAA ACCTCGAGTT GGGGGCTGCG CGGGGGCAAT
CAGATCAAGG TCTTCGATAC CGACGTCGGC CGTATCGGCA TCCTCATCTG CTACGATGTT
GAATTTCCGG AACTCCCGCG GCTCATGACC GCTCAAGGAG TGGAAATTCT GCTGGTTCCT
TTCTGGACGG ACACCAAAAA CGCCTATCTC CGGGTACGCC GCTGCGCCCA GGCCCGGGCC
ATCGAAAACG AATGCTATGT GGCTATCTCC GGCAGTGTCG GGAACATCCC CCGGGTCGAA
AACATGGACA TCCAGTATTC GCAGGCCGCG ATTTTTTCGC CCTCGGACTT CGCCTTCCCC
CACGACGCTG TGGCCGACGA GGCGACCCCG AATACGGAAA TGACCCTGAT TGCCGATCTG
GATCTCGACC TGCTCAAGGA CCTGCGGCAC CAGGGCTCGG TCCAGAACAT GAAAAACAGA
CGCCTTGACC TCTATTCCCT GAATTGGTTG TCCGGGGGAT CTTTTGACCC CACAGGAGAG
CACTCATGA
 
Protein sequence
MEESPEIFEH KLSLRNLRIE DYADLTEIMD RAYRAMDEIW ERDEIRSMIT RFPEGQLCIE 
DNGKVVAVAL SLIIDYAKYG STHTYQDIIG EGYLRNHDPN GDYLYGIEVF VHPDYQGMRL
GRRLYDGRKG LCEQLNLKGI LVGGRIPGYG RYSHEMSPQE YVTQVKNKEL HDPVLSFQLA
NDFHIKKLIK GYLPIDERSH GYAVLLEWNN IYYEEQPEIL SQRKSYVRLG VVQWQMRLFG
SFDDFLQQVE FFVDTVARYQ GDLILFPELF NAPLMARFDQ EDAADAMRSL AEYTEPLREE
LMRMALGYNI NIVSGSVPEY RDNKLFNVSF LCRRDGTWDT QYKLHITPEE TSSWGLRGGN
QIKVFDTDVG RIGILICYDV EFPELPRLMT AQGVEILLVP FWTDTKNAYL RVRRCAQARA
IENECYVAIS GSVGNIPRVE NMDIQYSQAA IFSPSDFAFP HDAVADEATP NTEMTLIADL
DLDLLKDLRH QGSVQNMKNR RLDLYSLNWL SGGSFDPTGE HS