Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_2339 |
Symbol | |
ID | 8420199 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 2660098 |
End bp | 2663226 |
Gene Length | 3129 bp |
Protein Length | 1042 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 645038941 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_003199200 |
Protein GI | 258406458 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTTCCA AAATATTCAT CGAACGCCCC AGGTTCGCGG TCGTTCTCGC GATCCTTATC ACCCTGGCTG GAATGATCGC TGTCTATTCC CTGCCCGTGG CTGAACACCC GGACATCACT CCCCCGGTGA TCCGGGTCAG CGCCGTCTAT CCCGGGGCCA GTTCCGAAGT GGTCCGGGAC ACCATTGCCG CGCCCATCGA AAAACAGATG AACGGCGTGG AGGACATGCT CTACATGCAG TCCGAATCCA CCGACGACGG CCGCTACTCC CTGGAAGTAA CCTTTTCCGT AGATTCTGAC CCGGACATCG ACCAGGTCAA TGTCCAGAAC CGACTCCAGC TGGCCGAGTC CAGCCTGCCG CAGGCGGTTT TGGATCAGGG TATCGACGTA CGACGTCGCT CCTCGGATAT GCTCGGGGTG GTCTCTTTCA CCTCCCCGGA CGGCTCCCGT GACCGGTTGT TCATGAGCAA CTATATCAGC CGGACCATCT CCGACGCTGT GCAGCGCGTC GACGGGGTCA GCGACGTCTT CATCTTCGGC GAGGCCGAAT ACAGCATGCG TATCTGGGTC GACCCGGACA AGCTCACCGC CCTGGACATG AATGGCAACG AGGTCATCCA GGCCATCCGG GAACAAAGTG TCCAGGCCAC GCTGGGCTCC ATCGGGACCG CCCCCACGGT TCCCGGGCAG AAACTCCAAT ACACCCTCAA AGCCCAGGGG CGGCTCAAGA GCGCCGAAGA ATTCGAAAAC ATCATCATCC GCAGCAACGA CCAGGGCGGT CAGGTCCGGG TCAAGGACGT GGCCGAGGTC GAACTGGGCA ACAAAACCTA CAGCGCCGCC GGGAACTTCA ACAACCAGGC CGCGGTCAAT GTCGCCCTGT ACCGCTCCTC GGAAGCCAAC GCCATGGAGA CCATGGAGGC GGCCCGGGCG GAACTCGAGC GCCAGGCAGA GCTTCTGCCC GAGGGCATGA CCTACACCAT CCCCTACGAC ACCACCAAAT ACATCCAGGC CACCATTGAT GAAATCGTCA CCACCCTGGC CCTGGTCTTC ATCCTGGTGG TCTTGGTCAT ATTCATCTTT TTGCAAAACT TCCGGGCCAC ACTCATTCCG GCGGCCGCCG TGCCCGTGTC CATCATCGGC ACCTTCGCCT TTTTGCTGGC CATAGGCTTC AACCTGAACA CCATCACCCT TTTTGCCCTG ATCCTGGCCA TCGGACTGGT GGTCGACGAC GCCATTGTCG TGGTCGAAAA CGTGCACCGC ATCATGGAAG AAGAGGACCT GAGCCCCAAA CAGGCGTCCA TCAAGGCCAT GGAGCAAGTG TCAGCACCGA TCGTAGCGAC TTCGCTGGTT CTGCTGGCTA TCTTTATCCC CGTCGCCTTT ATGCCTGGAA TCACAGGCCT TTTATATAAG CAATTCGGAC TCACCCTGTG CGTGTCCATC ATCATTTCCT CGTTTTGCGC CCTGACCCTG AGCCCGGCCC TGTGCACCGT GCTGCTTTCC AAACCCAAGC CCCACAACCG CGGCCCCTTC GGCTGGTTCA ACTCCCTCTT GGGCAAAACC CGCTTTGGCT ATACCAGCGT GGTCGGCTGG ATGATCCGCC ATCTTGCCGT TGCCCTGGGC CTTTTCCTGC TTGTGCTCGG CGGCTCCTGG TACTTCTACG GCACGTTGCC CACCAGTTTC CTGCCTCAAG AGGACAAAGG CGGCTTTCTC ATCGACGTCC AACTCCCGGA AGGGGCTACC CTGCAGCGCA CGGAAACGGT TACCGAGCGG GCCACCAAAT TGCTTCAGGA ACTCGAAGGC GTGGAAAATG TCCTGGCCAT CAACGGCTTC AGCCTGATGA CCGGCAGCGC GGAAAACGTC GGTTTCCTCA TCGCGGACCT CGACCCCTGG CAAGAGCGTC AGGATCCGGA ACTGCACATC AATGCCCTGG TGGACAAGAC AAACAAAAAG CTCAACGCCA TCACCACCGC GACCATCCGG TCCTTTGTCC CGCCGCCCAT CCAGGGTCTG GGCCTGACCG GCGGCTTCGA CTTCCGCCTG CAGGCCACCC AGGGGCAACC GCCCACGGAG CTGGCCGAGG TGGCCCGCGG GCTGGCCGGC CGTGCCAACC AGGATCCCAA GCTCACCCGG GTGTACACGA CCTTTTCGGC CAACACCCCC CAAATCAACC TCGAACTAGA CCGCTCCCAG ATGGGACAGC TCGGGGTGCA GGTGAGCCGC CTGTTCGGGA CATTGAACCA GCAACTCGGC GCCCAGTATG TGAACGATTT CAATCTCTAC GGCCGCACCT ATCAGGTCAA AATGCGCTCC CAGGCCGAAT ACCGCCAAAG CCGGCAAGAC ATCCTGGACC TGCACGTGGT CAACGACCGA GGCCAGAACG TGCCCGTGGA GAACTTCGTC GACCTGTCCA CAACTATCGG GGCCAAGACG GTCAACCGGT ACAATCAGTT CTCCAGCGCG GCGATCAAAG GCCAGGCCGC ACCGGGGTAC TCCTCTGGGC AGGCCATGGC GGCCATGCAA CAACTGGCGG ACAGGACCCT GCCCGACGGC TACGCCTTTG AATGGTCCTC CATGTCCTAT CAGGAACAAA AAGCCAGCGG CACCGTGATC TACCTCTATG CCCTGGCCAT TGTCTTCGCC TATCTCTTCC TGGTCGCTCT TTACGAGTCC TGGAACCTGC CCTTGTCCAT CGTGCTCTCT GTGGTCGTGG CCACCCTGGG CAGTTTTGTC GGGCTCTGGG TCACTTCCTA CTCTCTGTCC ATCTACGCCC AGATCGGGCT GGTGCTGCTG GTCGGACTGG CGGCGAAAAA CGCGATTTTG ATCGTGGAAT TCGCCCGCAG TAGCAAAACA GAAGGGGCCA CAACGTACAA AGCTGCCATT GAAGCCGCAG GCGTGCGCTT CCGCCCGGTA CTCATGACTG CCCTGACCTT TATTCTGGGG GTCGCACCTC TGGTCTGGGC CACCGGAGCT GGTGCAGCCA GTCGGCGCCA TATCGGCATC GTAGTCTTTT CCGGCATGGT CGCGGCAACC ACCCTGGGTA TTCTGCTCAT CCCGTCCCTG TACTATTTCT TCCAGCGCAT ACGGGAAAAG GGCAAAGCCT GGCGGGACGC TCTGCGTTCC AATACGTAA
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Protein sequence | MFSKIFIERP RFAVVLAILI TLAGMIAVYS LPVAEHPDIT PPVIRVSAVY PGASSEVVRD TIAAPIEKQM NGVEDMLYMQ SESTDDGRYS LEVTFSVDSD PDIDQVNVQN RLQLAESSLP QAVLDQGIDV RRRSSDMLGV VSFTSPDGSR DRLFMSNYIS RTISDAVQRV DGVSDVFIFG EAEYSMRIWV DPDKLTALDM NGNEVIQAIR EQSVQATLGS IGTAPTVPGQ KLQYTLKAQG RLKSAEEFEN IIIRSNDQGG QVRVKDVAEV ELGNKTYSAA GNFNNQAAVN VALYRSSEAN AMETMEAARA ELERQAELLP EGMTYTIPYD TTKYIQATID EIVTTLALVF ILVVLVIFIF LQNFRATLIP AAAVPVSIIG TFAFLLAIGF NLNTITLFAL ILAIGLVVDD AIVVVENVHR IMEEEDLSPK QASIKAMEQV SAPIVATSLV LLAIFIPVAF MPGITGLLYK QFGLTLCVSI IISSFCALTL SPALCTVLLS KPKPHNRGPF GWFNSLLGKT RFGYTSVVGW MIRHLAVALG LFLLVLGGSW YFYGTLPTSF LPQEDKGGFL IDVQLPEGAT LQRTETVTER ATKLLQELEG VENVLAINGF SLMTGSAENV GFLIADLDPW QERQDPELHI NALVDKTNKK LNAITTATIR SFVPPPIQGL GLTGGFDFRL QATQGQPPTE LAEVARGLAG RANQDPKLTR VYTTFSANTP QINLELDRSQ MGQLGVQVSR LFGTLNQQLG AQYVNDFNLY GRTYQVKMRS QAEYRQSRQD ILDLHVVNDR GQNVPVENFV DLSTTIGAKT VNRYNQFSSA AIKGQAAPGY SSGQAMAAMQ QLADRTLPDG YAFEWSSMSY QEQKASGTVI YLYALAIVFA YLFLVALYES WNLPLSIVLS VVVATLGSFV GLWVTSYSLS IYAQIGLVLL VGLAAKNAIL IVEFARSSKT EGATTYKAAI EAAGVRFRPV LMTALTFILG VAPLVWATGA GAASRRHIGI VVFSGMVAAT TLGILLIPSL YYFFQRIREK GKAWRDALRS NT
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