| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2320 |
|---|
| Symbol | |
|---|
| ID | 8420180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2636861 |
|---|
| End bp | 2638165 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 645038923 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_003199182 |
|---|
| Protein GI | 258406440 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCT CTGTACTCAC AATAACTCTT TCCAGCTTGG TTGTTTTATT TTTGATCGGG
ATGCCTGTTT TCATGAGTCT TGCAATATCT TCAGGTATTG CATTGATATA TGGTGGGTAT
TTGCCATTAT CTGTAATTCA TAACTCAATT TTTGACGGAC TTAATTTGTT TCCTCTTTTG
GCAATACCTT GCTTTGTAAT TGCTGGAACT CTAATGGAGT ATGGAAATAT AACAAAGCAA
ATTGTTGACG TTGTGAATCA AATCGTGGGT AAAATTTCTG GAGGCTTGGG TATAACCACA
ATCCTGGCGT GTACTTTTTT TGCTGCAATT TCAGGTTCTG GCCCGGGAAC TGTTGCTGCG
GTAGGAACGC TTTTGGTTCC TGCTATGCTC AGAAATGGCT ATAGTAAAGA GTATGCTGGA
GCTACTGCAT CCTCTGGTGG TACAATTGGT TTGCTTATTC CGCCAAGTAA TCCAATGATC
ATATATGCTA TCTTGGCAAA CGTTTCTGTC ACTGGCATGT TTACTGCAGG GTTTATACCT
GGTTTTATTG TAGGGTTTGT AATGGTCACT ACTGCTTGGC TTGTAGCTAG GCGCCAAGGG
TTTTCTGGTG ATCTAGAAGC TAAAGACTTT AAATTTAGTT ATTTTTTGAA GTCGTGTTTT
CGAAGTTTTT TTTCATTGGT GACTCCTTTG ATAATATTGG GGTCTATTTA CTCTGGTCTT
TGTACCCCAG TTGAGGCATC AGTGCTAGCT ATTGTTTACG CCTTATTTGT AGGTTTTTTT
ATTAATCGAG CACTTAATCT GTCATCTGTA TACAAGTCTC TTCTTGAAGG TGCAATGATA
TGTGGCTCTG TTTTAATTAT TGTAGGAACT TCTACCCTGT TTGGGAAAAT ATTAACTTTT
GAGCAAGCTC CTCAGCGCTT GGCTCAGTCA GTGTTAGAGG TTTCTTCTGA TCCTTATATC
ATAATGCTTA TGATCATCGG TGTTTTGATC TTTTTGGGAA TGTTTATGGA AACACTCTCA
ACAATTATTA TTTTGGTGCC AGTTCTAATG CCGATGTTTT CTGTTGTTGG AATTGATCCG
ATACATTTTG GGATTATTCT TGTCGTAACT AATGAAATGG CGCTTTTAAC ACCTCCGCTT
GGGGTCAATC TTTTTGTTGC ATCAAGAATT GCTAATGTTT CTGTCGAAAG GCTTGCGATA
GGTGTATTGC CTTTCTTGGT CGCCCTGCTC TTGTGTATCC TTCTTCTTAC CTTTGTTCCT
GACCTGTCAA CTTGGCTTCC TGCATATTTA GGTTATGGTC AATAA
|
|---|
| Protein sequence | MEFSVLTITL SSLVVLFLIG MPVFMSLAIS SGIALIYGGY LPLSVIHNSI FDGLNLFPLL
AIPCFVIAGT LMEYGNITKQ IVDVVNQIVG KISGGLGITT ILACTFFAAI SGSGPGTVAA
VGTLLVPAML RNGYSKEYAG ATASSGGTIG LLIPPSNPMI IYAILANVSV TGMFTAGFIP
GFIVGFVMVT TAWLVARRQG FSGDLEAKDF KFSYFLKSCF RSFFSLVTPL IILGSIYSGL
CTPVEASVLA IVYALFVGFF INRALNLSSV YKSLLEGAMI CGSVLIIVGT STLFGKILTF
EQAPQRLAQS VLEVSSDPYI IMLMIIGVLI FLGMFMETLS TIIILVPVLM PMFSVVGIDP
IHFGIILVVT NEMALLTPPL GVNLFVASRI ANVSVERLAI GVLPFLVALL LCILLLTFVP
DLSTWLPAYL GYGQ
|
|---|
| |