Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_2161 |
Symbol | |
ID | 8420012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 2457518 |
End bp | 2458492 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 645038755 |
Product | protein of unknown function DUF534 |
Protein accession | YP_003199023 |
Protein GI | 258406281 |
COG category | [R] General function prediction only |
COG ID | [COG2984] ABC-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.321904 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCACA AGACGAATCT GCTTATTGCC GCCGTTGTGA CCGTTCTTGT TTTCTTCGGT GCATCCGTCC AGGCCAAGAC GTACGAAATC TCTGTCAGCC AGTTTGTGGA GCACCCCGCC CTCGACGCTG TCCTTCAGGG TTTCCAGGAC GCGGTTGCTG AGGCCGGAAT CGAGGTCGAC TACAACGTCC ACAACGCGCA GGCCAACACG GCCATCACTG GGCAAATCGC CCAGCAGATC GCCGGGGAGC GCCCGGATCT GGTCCTGGCC ATTGCCACCC CGACAGCTCA GGCGTGTGCC CAGGTCACCA AAAAAGCGCC CCATATGGCC AAAACCCCCC TCCTTTTTTC TGCGGTCACC GACCCCGTCG GGTCCGGCCT GGTCGACAAC CTGGAACGCC CCGGGGGCAA CATCACCGGC ACCTCCGACC TGACGCCCAT CGGCAAGCAC CTGGATCTTA TTCGGACCAT CCAGCCTGAG CTCAAGACCG TTGGTGTGAT CTATAATGCC GGCGAGGCCA ACTCCAAGAC ATTGGTCGGG CTGGTCCGCG ACGAAGGGCA AAAACGCGGC ATCGCTGTCG AAGAAGCGAC CGCCGCACGT TCGAGCGAGG TCTATCAGGC TGCCAAGAGC CTGGTCGGTG TCGCCGATGC CGTTTATGTG CCCACCGACA ACACCATCGT TTCCGCTTTC GAGTCCGTGA CCAAAGTCTG CCTGGACAAT GATCTTCCTC TCTACGCCGC TGATGTCGAC TCTGTGCCTC GCGGCGCCAT CGCCGCTCTT GGCTTTGACT ACTACAAACA CGGACGCCAG ACGGGCAACA TGGCCGTTCG CATCCTTCGG GGCGCCGATC CGGGCCAGAC CCCGGTAGAG ATGCAAAAAG ATTTGGAACT CCACCTCAAT CTCGAATCCG CTCAGGCTAT CGGGGTTGAA ATCCCCCAAA AGCTCAAGGA CCAGGCCGCC AAGATCTACG AATAG
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Protein sequence | MTHKTNLLIA AVVTVLVFFG ASVQAKTYEI SVSQFVEHPA LDAVLQGFQD AVAEAGIEVD YNVHNAQANT AITGQIAQQI AGERPDLVLA IATPTAQACA QVTKKAPHMA KTPLLFSAVT DPVGSGLVDN LERPGGNITG TSDLTPIGKH LDLIRTIQPE LKTVGVIYNA GEANSKTLVG LVRDEGQKRG IAVEEATAAR SSEVYQAAKS LVGVADAVYV PTDNTIVSAF ESVTKVCLDN DLPLYAADVD SVPRGAIAAL GFDYYKHGRQ TGNMAVRILR GADPGQTPVE MQKDLELHLN LESAQAIGVE IPQKLKDQAA KIYE
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