Gene Dret_2134 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2134 
Symbol 
ID8419984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2431800 
End bp2432507 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content62% 
IMG OID645038727 
Productprotein of unknown function UPF0005 
Protein accessionYP_003198996 
Protein GI258406254 
COG category[R] General function prediction only 
COG ID[COG0670] Integral membrane protein, interacts with FtsH 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000183428 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.170874 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGATT TTCGTAATAT CACCGCAACC CAGTCCAGCG CGGTGGCTAT CAACGCCTTC 
ATGCGCGGAG TCTACACCTG GATGTCTGGC GGCCTGCTGC TCACGGCCGT GGTCGCTTTC
GGGGTCATCA ACACCCCGGC GCTCATCCAG ACCGTGGCCA GCAATCCGAC CATCCTGCTG
GTGCTCATCC TGGCCGAACT CGGCCTGGTC CTGACCATCA GCGCCGGCAT CTCCAAACTC
TCCGGGACCA TGGCCACGAG CCTGTTCATG CTCTACAGCG GCCTCAACGG CGTCACCCTG
GCCCCTATCC TGCTGCTGTA CACCGGCGCC TCAGTGGCCG GGACCTTTGT CATCTGCGCC
GGCATGTTCG GAGCCATGTC CCTCTACGGC TTGACCACGA AAAAGGACCT GACCTCCTGG
GGCAGCTTCC TGTTCATGGG CCTGATCGGG ATCGTCCTCG CCGCGGTGGT GAACATGTTC
CTGCAAAGCG CCATGATCGA ATTCGTGATC AGCGGTGTCG GCGTTCTGGT CTTCACCGGC
CTGACCGCCT GGGACACCCA GCAGCTCAAG ACCATGGGTG AAACCGCCCC GGCCGACGAC
GCCACCGCTG TGCGCCGCGG CACCATTCTC GGCGCCCTGC GGCTCTATCT CGACTTCATC
AATCTCTTTC TCATGCTCCT GCGCTTCTTC GGCCAGATGC GCGAGTAA
 
Protein sequence
MADFRNITAT QSSAVAINAF MRGVYTWMSG GLLLTAVVAF GVINTPALIQ TVASNPTILL 
VLILAELGLV LTISAGISKL SGTMATSLFM LYSGLNGVTL APILLLYTGA SVAGTFVICA
GMFGAMSLYG LTTKKDLTSW GSFLFMGLIG IVLAAVVNMF LQSAMIEFVI SGVGVLVFTG
LTAWDTQQLK TMGETAPADD ATAVRRGTIL GALRLYLDFI NLFLMLLRFF GQMRE