| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2039 |
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| Symbol | |
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| ID | 8419884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2339706 |
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| End bp | 2340749 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645038627 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_003198901 |
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| Protein GI | 258406159 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0253649 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000243746 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCGTCA AAGACGGTGA CAAACTTGTC AATTGCCGTA ATTGGTCGAC GCTGGTTCAT
CCAGAGACTC TTGAGCGGGA TGAAGACAGC ACGGAGAACT ATGGCAAGTT TTCCTGCGAA
CCTTTGGAGC GGGGTTTTGG AACGACCTTA GGCAATGCCC TGCGCCGGGT GCTGCTGTCC
TCTCTGCAAG GGGCGGCCAT TGTAGCGGTG CGCATCAAGG GTATCCAGCA CGAGTTCACG
ACGATCCCCG GGGTAATGGA GGACATTACT GATATAGTCC TCAATTTGAA GCAGTTGCGT
TTGCGGATGA ATACGGACGA GCCTCAGCGT ATTGAACTCA ATGTCAATAC CAAGGGTGCC
GTGACGGCTT CCGCGTTTCA GACAACGCAA AACCTCGAGA TCCTGAATCC GGACTTACAT
ATCGCCACCT TGTCGGAGGA TATCGAATTC GGCATTGAGG CTGAAGTGCG GATGGGAAAA
GGGTATGTTC CGGCGGAGAT GCATGAAGGA TTGGAAGAGG AAATCGGGCT GATTTCCATG
GATGCCAGTT TCTCTCCGAT CCGCAAAGTC GCGTATCGTG TGGAACAGGC CCGCGTGGGC
CAGATGACCA ACTATGACAA ACTGGTCATG GAAGTCTGGA CTGACGGGTC CGTGTTGCCC
GAGGACGCTG TGGCTTATAG CGCCAAAATC CTGAAAGAAC AGCTGGCCGT GTTCATTAAT
TTCAATGAAG ACAGTGCCAA TGTCTGTGAA TCCAAGGGTG CCGGCACCGA GTCATTGAAC
TCGAACCTCT TCAAACATAT TGATGACCTC GAACTCCCCG TCCGGGCCAG CAATTGTCTG
AAAAGCGCCA ACATCAATCT TGTTGGTGAA CTGGTCCAGA AGACCGAGGG CGAGATGTTG
AAGACCAAGA ATTTTGGTCG CAAATCGCTT GAGGATATCC GCAAGGTGAT CCATGAACTC
GGTCTCGACT TCGGAATGAA GCTGGACGGC TTCGAGGAAC AATACAAGAA ATGGCGAGAG
AGGAACCAGC AAGATGAGGC ATAA
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| Protein sequence | MIVKDGDKLV NCRNWSTLVH PETLERDEDS TENYGKFSCE PLERGFGTTL GNALRRVLLS
SLQGAAIVAV RIKGIQHEFT TIPGVMEDIT DIVLNLKQLR LRMNTDEPQR IELNVNTKGA
VTASAFQTTQ NLEILNPDLH IATLSEDIEF GIEAEVRMGK GYVPAEMHEG LEEEIGLISM
DASFSPIRKV AYRVEQARVG QMTNYDKLVM EVWTDGSVLP EDAVAYSAKI LKEQLAVFIN
FNEDSANVCE SKGAGTESLN SNLFKHIDDL ELPVRASNCL KSANINLVGE LVQKTEGEML
KTKNFGRKSL EDIRKVIHEL GLDFGMKLDG FEEQYKKWRE RNQQDEA
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