| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1966 |
|---|
| Symbol | |
|---|
| ID | 8419811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2252103 |
|---|
| End bp | 2254106 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645038554 |
|---|
| Product | adenylylsulfate reductase subunit alpha |
|---|
| Protein accession | YP_003198828 |
|---|
| Protein GI | 258406086 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR02061] adenosine phosphosulphate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00115626 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCAGA TTCCTGTGAA AGATGAGCCC AAAGGTCTGC CGCTGGCAGA ACCTGAAGTG
GTAGAGATGG ATGTCGATGC GTTGATTGTT GGTGGCGGAA TGGGCTCCTG CGGAACGGCT
TTCGAGGCTG TTCGCTGGGC CGACAAGTAC GCCCCTGAAC TGAAGATCCT GCTGCTCGAC
AAAGCCGCTC TGGAGCGCTC CGGTGCTGTG GCCCAGGGGC TGTCGGCTAT CAATACCTAT
CTCGGCGACA ATGAACCCGA CGACTACGTC CGCATGGTCC GGACCGACCT CATGGGCATT
GTCCGCGAAG ACCTGATCTA CGACCTTGGC CGCCACGTTG ACGATTCCGT TCACCTCTTC
GAGGAATGGG GTCTGCCGTG CTGGGTCAAG AAAGACGGCA AGAACCTCGA CGGCGCCAAA
GCCAAGTCCG AGGGCTTGTC CCTGCGCACC GGCGCGACCC CGGTTCGCTC CGGCCGCTGG
CAGATGATGA TCAACGGTGA GTCCTACAAG AACATCGTTG CCGAAGCCGC CAAGAACGCC
TTGGGCGAAG ACCGCTACAT GGAGCGCATC TTCATCGTGA AGCTGCTCCT GGACGCCAAT
GAGCCTAATC GGATCGCTGG CGCCGTCGGT TTCTCCGCCC GTGAAAACAA AGTCTTCATC
TTCAAGGCCA ATGCCATCAA CGTGGCCTGC GGCGGCGCCG TGAACGTGTA CCGCCCCCGC
TCCACTGGTG AAGGCATGGG TCGCGCCTGG TATCCGGTCT GGAACGCTGG TTCCACCTAC
ACCATGGTGG CCCAGGTCGG CGGCGAAATG ACCATGATGG AAAACCGCTT CGTCCCCGCC
CGCTTCAAAG ACGGCTATGG TCCGGTCGGT GCCTGGTTCT TGCTGTTCAA GGCCAAAGCC
ACCAACGCCA AGGGCGAAGA CTACTGCCAG ACCAATGCGG CCATGCTCAA GCCGTATCAG
GATCGCGGTT ACGCCGTCGG TGCGGTTATC CCCACCTGCT TGCGGAACCA CATGATGCTG
CGTGAAATGC GCGAAGGTCG TGGCCCGATC TACATGGACA CCGCCACTGC GCTGCAGACC
ACCTTCAAGG AGCTCAACAA GCAAGAGCAG AAGCACCTTG AAAGTGAAGC CTGGGAAGAC
TTCCTCGACA TGTGCGTCGG TCAGGCCAAC CTCTGGGCGG CCATGAACAT CAAGCCTGAA
GAATCGGGCT CTGAGATCAT GCCCACTGAG CCGTACCTGC TCGGTTCCCA CTCCGGTTGC
TGCGGTATCT GGGTTTCCGG ACCCGACGAA GACTGGGTCC CTGAAGAATA CAAGATCAAG
GCTGACAACG GGAAGGTCTA CAACCGCATG ACCACCGTGA ACGGCCTGTG GACCTGCGCT
GACGGCGTTG GCGCCTCCGG ACACAAGTTC TCCTCCGGTT CCCACGCCGA AGGCCGGATC
GTTGGAAAGC AAATGGTCCG CTGGTGCGTT GATCACAAGG ATTTCAAACC GGCTCTGAAG
CAGTCTGCTG AAGAGCTGAA GAAAGAAATC TATCAGCCGT ACTACACCTA CCAGGAAAAC
AAAGACGTCT CCACGGATCC GGTGGTCAAC CCCAACTACA TCTCGCCGCG TAACTTCATG
TTCCGCCTGA CCAAGTGCAC GGACGAGTAT GGTGGTGGTT GCTCCACGTA CTACACGACT
TCGGAAGCTT TGCTGAAGAC CGGCTTTGAA CTCCTGGACA TGATGGAAGA AGACTCCAAG
CTCTTGGCTG CTCGTGACCT GCACGAACTG CTGCGTTGCT GGGAAAACTT CCACCGTCTC
TGGACTGTCC GTCTGCACAT GCAGCACATC GAATTCCGTA AGGAAAGCCG TTACCCCGGT
TTCTACTATC GTGCTGAGTA CATGGGCATT GATGACAGCA AATGGCGTTG CTTCGTCAAC
TCCAAGTACG ATCCGGAAAA GGGCGAGACG ACTCTGTTCA AGCGCCCCTA CATCCAGATC
ATTCCCGATC CGATGTCCCC GTAG
|
|---|
| Protein sequence | MPQIPVKDEP KGLPLAEPEV VEMDVDALIV GGGMGSCGTA FEAVRWADKY APELKILLLD
KAALERSGAV AQGLSAINTY LGDNEPDDYV RMVRTDLMGI VREDLIYDLG RHVDDSVHLF
EEWGLPCWVK KDGKNLDGAK AKSEGLSLRT GATPVRSGRW QMMINGESYK NIVAEAAKNA
LGEDRYMERI FIVKLLLDAN EPNRIAGAVG FSARENKVFI FKANAINVAC GGAVNVYRPR
STGEGMGRAW YPVWNAGSTY TMVAQVGGEM TMMENRFVPA RFKDGYGPVG AWFLLFKAKA
TNAKGEDYCQ TNAAMLKPYQ DRGYAVGAVI PTCLRNHMML REMREGRGPI YMDTATALQT
TFKELNKQEQ KHLESEAWED FLDMCVGQAN LWAAMNIKPE ESGSEIMPTE PYLLGSHSGC
CGIWVSGPDE DWVPEEYKIK ADNGKVYNRM TTVNGLWTCA DGVGASGHKF SSGSHAEGRI
VGKQMVRWCV DHKDFKPALK QSAEELKKEI YQPYYTYQEN KDVSTDPVVN PNYISPRNFM
FRLTKCTDEY GGGCSTYYTT SEALLKTGFE LLDMMEEDSK LLAARDLHEL LRCWENFHRL
WTVRLHMQHI EFRKESRYPG FYYRAEYMGI DDSKWRCFVN SKYDPEKGET TLFKRPYIQI
IPDPMSP
|
|---|
| |