| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1961 |
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| Symbol | |
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| ID | 8419806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2244434 |
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| End bp | 2245882 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645038549 |
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| Product | sodium/proline symporter |
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| Protein accession | YP_003198823 |
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| Protein GI | 258406081 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0044995 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGAGTG TGCCCACCTT TACCTCCTTT GTCGTCTACT TGATTGTCAT GATGTCCATC
GGGATTTTTT TCTACTACCG GACCAAAAAC CTCTCGGACT ACATCCTCGG CGGACGCCAA
CTCAGCCCGG CAGTGGCCGC CTTGAGCGCC GGGGCTTCGG ACATGAGCGG CTGGTTGTTG
CTCGGTCTGC CCGGGGCCAT GTACGCCGGA GGGATGAACA ACATCTGGAT CGCTGTCGGC
TTGTCCATTG GCGCCTATCT GAACTGGCAG TTCGTGGCCA AGAAATTACG GACCTATACG
GAAAAGGCCG GTGACGCGAT CACCCTGCCC GACTACCTGG AAAACCGCTT CGGCGATTCC
TCGCGCATCC TGCGGGTCAT CTCGGCCATC GTGATTCTCA TCTTCTTCAC TATCTACGTC
TCTTCCGGCC TGGTCGGCGG GGCCATCCTT TTCGAGAAAA CCTTTGGCCT GAACTACCAG
CTCGCCCTGT GGGTCGGGGC CCTGGTCATC GTGGCCTACA CCTTTCTCGG CGGGTTCATG
GCCGTCAGCT TGACCGACTT TCTCCAGGGA ACGCTGATGT TTATCGCGTT GCTGGTGGTT
CCGGCCGTCG TGATCGCCAA AATGGGCGAT TGGGGCACCG TGGTCGACAA GGTCGCGCAT
GTCGACGCCA AATATGTGGA CGCCTTTTCC GGCATGACCT TGCTGTCGAT TATCTCTCTC
ATGGCCTGGG GACTGGGCTA TTTCGGGCAG CCCCATATTC TGGCCCGCTT CATGGCCATC
CGGCGGGCCA AGGACGTGCC CAAGGCGCAG ATGGTCGGCA TGACCTGGAT GGTTCTGGGC
CTTTTCGGGG CCATTTTCAC CGGTTTTGCC GGCATCGCCT ATTATGTGGG CAGTCCGCTG
GAAAATTCAG AAACCGTCTT CATCGCTTTG ACCCAGGCCC TCTTCAATCC CTGGATCGCC
GGCATCCTGC TGGCCGCCAT TCTTTCGGCC ATCATGTCCA CCGTCGACTC CCAGCTTTTG
GTCTGCTCCA GCGCTATTGC CGAAGACTTT TACAAACAGA TCCTGCGCAA GGAAGCCCCG
CAAAATGAAC TGGTCTGGAT CGGACGGGTG TCCGTGCTCA TCCTGGCCCT GATCGCGACC
TCCCTGGCGG CCGACCCGAA CAGCAAGGTC CTGGACCTGG TGGCCTACGC CTGGGGCGGC
TTTGGCGCCG CCTTCGGCCC GGTGGTCATT TTGTCCCTGT TCTGGCGGCG CATGACCCGC
AACGGGACCC TGGCCGGGAT GATCGTCGGC GCTGTGACCG TCATCGTCTG GAAGCACATG
ACCGGTGGCC TTTTTGATCT CTACGAGATC CTGCCCGGGT TTCTGTTCTG TGCTCTGACC
GTTATCATCG TCAGCCTCCT GGACAAAGCC CCCGGCAAAT CCGTCACTGA GGTTTTCGAC
TCCGTCTGA
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| Protein sequence | MMSVPTFTSF VVYLIVMMSI GIFFYYRTKN LSDYILGGRQ LSPAVAALSA GASDMSGWLL
LGLPGAMYAG GMNNIWIAVG LSIGAYLNWQ FVAKKLRTYT EKAGDAITLP DYLENRFGDS
SRILRVISAI VILIFFTIYV SSGLVGGAIL FEKTFGLNYQ LALWVGALVI VAYTFLGGFM
AVSLTDFLQG TLMFIALLVV PAVVIAKMGD WGTVVDKVAH VDAKYVDAFS GMTLLSIISL
MAWGLGYFGQ PHILARFMAI RRAKDVPKAQ MVGMTWMVLG LFGAIFTGFA GIAYYVGSPL
ENSETVFIAL TQALFNPWIA GILLAAILSA IMSTVDSQLL VCSSAIAEDF YKQILRKEAP
QNELVWIGRV SVLILALIAT SLAADPNSKV LDLVAYAWGG FGAAFGPVVI LSLFWRRMTR
NGTLAGMIVG AVTVIVWKHM TGGLFDLYEI LPGFLFCALT VIIVSLLDKA PGKSVTEVFD
SV
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