Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1881 |
Symbol | |
ID | 8419724 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 2157941 |
End bp | 2159623 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 645038467 |
Product | Peptidoglycan-binding lysin domain protein |
Protein accession | YP_003198743 |
Protein GI | 258406001 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3170] Tfp pilus assembly protein FimV |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.210829 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000286942 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCGCTGGT CGATCCCCCT TGTTTTCGCT CTCTTGGGAG CCATCCTCCT GTCAGCCGCT CCGGCCCGGA CAGCGCCGCG CCTGTTCTTC AACAAAAACG TCGACGCTCC GGCCGGCTAC CAACTCTACA CCGTCCAGGC TGGGGACACA TTGTTCCGCA TCATGCGCGG TCGAGGCTGG GACAACGCCG CCATCGAACA CGCCCTGCCC ACCATCGACC GCGCCAACCC CCATATCCCG GATCTGGACA CCCTCCGGCC CGGACAGCGC ATCTTCCTGC CTCCCCCGCG AGGCGAAGCC CCTTCGGCCC CAGGCCCCAC CCTGCCCGAC TCTGTCAGCC AGGTGCCGTA TACCGTCCAG CCCGGGGACA CGGTCTTCAC CATTCTGCGC CGCCGGACAA ACCTGCCCGT GCGTGCCATC CACCGCCGCT ATCTCGACTA TTTCCGCCAG GCCAATCCTG AACTCGACAA TATCGACCGC ATCTATCCCG GTCAGCAACT GCGGCTCCCG GTGCCCAAGC CATCGCCCGT CGCCTCGGAC GCAGCGACAA ACAGCACAGC CCCCGACCCA GCGTCGCCAT CTCCCCGTGC AAGCGCCAAC GCCACCGAGC CTTCCACGCC GACTGCCGCC CCTACAGCTT CGCCCAAGAG TTCAAACAGC ACGGTCACAA CACCCAAGAG AACACCCTCC GACGCCGACC TGGCCACCGC CGTGGGCAAG GGGCCGCAAC CCGGAGCCGG TTCACAAACG ACGACCGGTG CAGACTCGGC GCCACCTCCG CCCAATGCAG CCGGCGCGCC CCTGCCAGAA GGCCCTGACG CACCCCGCAC CACCACGGAC GCCGCTTCGC CCACTCCGGC TCAAACTGCT GCCGCTAGCT CGTCCGAGTC TGCACCTTCC CAGGCTGAGC CCAACGACGC TTTTTATGCC CTGGCCAAAC AGGCTGGCTA CCAGCCCGTT CGCGGCGGGA CTCGATACTT CCCCACTGAC AAAGGCTGGC TGCAAATCGA CACCGAGCGC ACTCCGCTTC TCAAGACCCC CTCCGGGGAG ACCCTCATCC TCGTCCCCGG AGAGGATACC CAACGCTATG CAGACGCCGG TCTGACGCCC CTTTCTGTTC CCGCCAACTG GGAGACCGAA GACGCCCTCA AAGCCCTGGA CCGGACCGAT CCTGAACTGG TCCAGCTCTG GCCGCGCAAC AGACCGCTTA TCACTCACCG CCGCCACCTC GGCCTGGAAC TGCGCGGCAA ATGGATCTTT GTCGACAAGG GACAGACCCC GTCGCGCATC TACGTCCTGA TCGATCCCCA GCGCCAGGTG AGTTTCGAAA CCCGAGTCCT GGCCGGGCTG CTCCAACAAC GCAACATCAT TCTCAGCACA TGGGACGCCC CTTCCCAGGA ACTCCTGCCG GTCCAGCCGC CGCCCCAAGA GCAGATCCTC GTCCCCCACC TGCGCATGGC CGAATTGCGG CAGGAATTCG GCGGACGGGT CCCCGTGTCC GGGATGCACG CCCGGCGCCA CCTCTTTCTG CCCCGATCGG GTGCCCCTAT CGGCATCACC TTTCGCTGCC GCACCCTGCG CCGCGGCCAG GGCCCGGAGC TGATCTTTCC CCCCGGGACC GATATCTACC TCCCGGCCCT GCTCCACCTC ACCGGCCGCC CGTGCTGGAT CTTGGGAGGG TGA
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Protein sequence | MRWSIPLVFA LLGAILLSAA PARTAPRLFF NKNVDAPAGY QLYTVQAGDT LFRIMRGRGW DNAAIEHALP TIDRANPHIP DLDTLRPGQR IFLPPPRGEA PSAPGPTLPD SVSQVPYTVQ PGDTVFTILR RRTNLPVRAI HRRYLDYFRQ ANPELDNIDR IYPGQQLRLP VPKPSPVASD AATNSTAPDP ASPSPRASAN ATEPSTPTAA PTASPKSSNS TVTTPKRTPS DADLATAVGK GPQPGAGSQT TTGADSAPPP PNAAGAPLPE GPDAPRTTTD AASPTPAQTA AASSSESAPS QAEPNDAFYA LAKQAGYQPV RGGTRYFPTD KGWLQIDTER TPLLKTPSGE TLILVPGEDT QRYADAGLTP LSVPANWETE DALKALDRTD PELVQLWPRN RPLITHRRHL GLELRGKWIF VDKGQTPSRI YVLIDPQRQV SFETRVLAGL LQQRNIILST WDAPSQELLP VQPPPQEQIL VPHLRMAELR QEFGGRVPVS GMHARRHLFL PRSGAPIGIT FRCRTLRRGQ GPELIFPPGT DIYLPALLHL TGRPCWILGG
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