| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1706 |
|---|
| Symbol | |
|---|
| ID | 8419537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1962424 |
|---|
| End bp | 1964055 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645038280 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_003198568 |
|---|
| Protein GI | 258405826 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.826094 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0186446 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAA TAGAGATCTA CGACACGACA TTGCGCGACG GCACCCAATC CGAAGATGTC
AATCTTTCGG CTGAAGACAA ATTGCGCATC ACCCAGCGAC TGGACGACCT CGGTGTGACG
TACATCGAGG GCGGCTGGCC GGCCTCGAAC CCAACAGACA GACGGTATTT CGAGGAAATC
GGCAATTACA CCCTGAAACA CGCCCGGGTC AGCGCCTTTG GCAGCACGCA CAACGCCCGG
ACAACGCCGG AGAACGACCC CAATATCCAG TCATTGCTGG ACGCCCGGAC CAACGTCCTG
ACCATCTTCG GCAAAACCTG GGACATCCAC GTTCGTGACG CCCTGCGGGT CCCCCTGGAA
CGCAACCTGG AACTGATCCA CAATTCCCTG GCCTACCTGC GTGACGAGGT GGCCAAACTC
TTTTTCGACG CCGAACATTT CTTCGACGGC TACAAGGCCA ACCCGGAATA CGCCCTGGCC
TGCCTGCACC AAGCCCATGA GGCCGGAGTC GACGCCCTGG TGCTCTGCGA CACCAACGGC
GGCAGTCTGC CGCAGGAGAT CGCGGAGATC ATGGCTGTGG TCCAAAAGGA GCTGCCGCAG
GCTTCGCTCG GCATCCACGC CCACAATGAC AGTGAACTGG CTGTGGCCAA CAGCCTCCAG
GCGGTCCAAT CAGGCGCCAC CCACGTCCAG GGGACCATCA ATGGCTACGG CGAACGGTGC
GGCAACGCCA ATCTCTGTTC CATCATCCCG AACCTGGAGC TCAAACAGGG ACACAAATGC
CTTCCGGAGA ACCATCTCCC GAAACTGACC CAGACCGCCC TGTACATCTC TGAAGTCGCC
AATGTGCAGG CCTTCCACCG TCAGCCCTTT GTCGGCCGCT CCGCCTTCGC CCATAAAGGG
GGGATCCACG TCAGCGCTGT CAGACGCAAT CCCCGGACCT ACGAACACAT CGAACCCGAA
ACAGTGGGCA ACAAGCAGCG GATCCTGCTC TCCGATCTCG CTGGCCAGAG CAATATCCTC
TTCAAAGCCA AACAATACGG CTACCACCTC GACAAAAACG ATCCTTTCGT CCTCGAACTG
CTCTCCCAGA TCAAGGAACG CGAAAGCAAC GGCTACGAAT ACTCCGCCGC CGAAGCTTCC
TTCGAACTCC TGCTCAACCG GACCTTGGGC CGGGCCCGAA AATACTTCAC ATTGTTGGGG
TTTCGGGTCA CGGACGAAAA ACGGCAGGAA AACAAAGACC CCTATTCTGA GGCCACGGTC
ATGGTCCAGG TAGGGGGCGT CACCGAGCAC ACCGCCGCCG CTGGCGAAGG GCCGGTCAAC
GCCCTGGACA ACGCCATGCG CAAGGCCCTG GAAAAATTCT ACCCCACCTT GACCGAAATG
CACCTTTTGG ACTTCAAGGT CCGGGTCCTG CCCCCGCAAC GCACCAGCGA CGGCAAGGAG
GGCACGGCCT CCAATGTCCG GGTCTTGATC GAATCCGGGG ACAGCCAATC GCGCTGGATC
ACTGTCGGCG TCTCCTACAA CATCATTGAA GCGAGTTGGC AGGCCCTTGA GGACGCCATC
AACTACAAGC TGTTCAAAAA CGACCAGCTG AAAATCGAAC AAGCCATGGC CCAGGCCAGG
ACGGAGACAT GA
|
|---|
| Protein sequence | MNRIEIYDTT LRDGTQSEDV NLSAEDKLRI TQRLDDLGVT YIEGGWPASN PTDRRYFEEI
GNYTLKHARV SAFGSTHNAR TTPENDPNIQ SLLDARTNVL TIFGKTWDIH VRDALRVPLE
RNLELIHNSL AYLRDEVAKL FFDAEHFFDG YKANPEYALA CLHQAHEAGV DALVLCDTNG
GSLPQEIAEI MAVVQKELPQ ASLGIHAHND SELAVANSLQ AVQSGATHVQ GTINGYGERC
GNANLCSIIP NLELKQGHKC LPENHLPKLT QTALYISEVA NVQAFHRQPF VGRSAFAHKG
GIHVSAVRRN PRTYEHIEPE TVGNKQRILL SDLAGQSNIL FKAKQYGYHL DKNDPFVLEL
LSQIKERESN GYEYSAAEAS FELLLNRTLG RARKYFTLLG FRVTDEKRQE NKDPYSEATV
MVQVGGVTEH TAAAGEGPVN ALDNAMRKAL EKFYPTLTEM HLLDFKVRVL PPQRTSDGKE
GTASNVRVLI ESGDSQSRWI TVGVSYNIIE ASWQALEDAI NYKLFKNDQL KIEQAMAQAR
TET
|
|---|
| |