| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1570 |
|---|
| Symbol | |
|---|
| ID | 8419400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1818526 |
|---|
| End bp | 1819083 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645038143 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003198432 |
|---|
| Protein GI | 258405690 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.17061 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAACCCA ACGCGCAGCA GGAGCAGGAA AAACAAGCCG TCCGACGAGT ACTCGCCGGC
GAACGGCGGG CTTTTGCCGT GTTGGTCGAT CGGTATCAGA CCCCGATCTA CAACCTTTTC
CTGCGTGCCA CGCATTCTCC GTCCCTGGCT GCGGACCTGA CCCAGGAGAC GTTTCTCCAG
GCCTTCCGCC GTCTGGAAAC GTTCAATACC CGAAAACGAT TTTTCCCGTG GCTCTACGCC
ATCGGCATGA ACAAGGTCCG GGATCATCTG CGGCGGGAAA AACGCCAGAC GACGCGTTCC
CTGGACGAGG ACAGCAATGG AGAGCTGGAG TGGGAGACGG CACGTTTCGA CGCGGTTGCG
GCCCATCTCG ATGTCCTGCA TCTGGAAGCG GCCCTGGCCA AATTGCCTCT GGAATACCGC
GAAGCCCTGA TTTTACGCTA TCGTGAGCAG TGGGCCACCC ATGAGATCGC CACCGCCCTG
GGATTGAGCC CAAGCGGGGT GAAAATGCGC GTTCAACGCG GTCTGGCCCA ATTACGCAAA
CTCATGGAGG ACACATGA
|
|---|
| Protein sequence | MEPNAQQEQE KQAVRRVLAG ERRAFAVLVD RYQTPIYNLF LRATHSPSLA ADLTQETFLQ
AFRRLETFNT RKRFFPWLYA IGMNKVRDHL RREKRQTTRS LDEDSNGELE WETARFDAVA
AHLDVLHLEA ALAKLPLEYR EALILRYREQ WATHEIATAL GLSPSGVKMR VQRGLAQLRK
LMEDT
|
|---|
| |