| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1510 |
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| Symbol | |
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| ID | 8419339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1753516 |
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| End bp | 1755261 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645038084 |
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| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
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| Protein accession | YP_003198374 |
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| Protein GI | 258405632 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.865852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.193576 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCAG GTAATCCCGT GCAACAGGGG AGGGCCTTGG ACACACTCAG ATCAGCTTTG
GCCCGAGTCA GCGTCGGCGC CATGATTACC GATGCCCAAT TGGAGCCGAC TGGCCCCTGC
ATCGTCTACG TCAATCCCGC TTGGGAACGG CTGACCGGGT TCTCCGCTGA GGCGGTAGTG
GGCAGTACGC CGCACATTCT CTATGGTCGG GAAACTTCCG CCAATGCCCT AGATGATTTA
CGCGCCTCAT TGAAGGAAGA TGGGACAGCC CAGTCCGAGA CGGTCATATA CCGGCGTGAT
GGGACGCGCT TGAACATGGC TGTCTCCATT TCCCCGCTGT GCCTCTGCGG TGACGGGGTT
GACCATTACT TGGCCCTCCA GTGGGATGTG ACCGCCCATC GTGAGACTTG CGCCCGGAAT
CGCGATCTGG AGGCTCTCAC TCGGCTTCAA CGAGCGGTGA TTATGGAGAA TCTGAACATC
GATTCTCTTC GGCAGCGAGT AGCGAATGGG GCTCTTGAGG TTACTGGCGC CCACGCAGCT
GTTGTGGAGG AGGCCGAAGA AGGGGAAATG GTCTATCGGG CCGTGGCGGG GATGGCTGAA
GGGCAGCTGG GTCTGCGTTT ACCTATAGAC CAGTCAGCCT CAGGGCTGGC CTATCGAAGC
AAAGAACCTG TTCTGGTCAG GGATGTGGAC CGCGACGATC GCATCCAACT CAAGGCCAAG
GCCCGAGAGA TCGGCTTTCT CTCCGGTATT ATGGTGCCTC TTGCCCAAGC TGGGCGCATT
TTTGGGGTGC TGAAGGTCTA CGCTAACCAG GCGGATCATT TTCATGAGCG GGATCAGTAT
TTTCTGGAGG TGGCCTCAGG AGTTCTGGCC GCCAATTTGC ACAAGGCGGC AGAGTACGCC
TCCTCGGAGC AGCGCCGCAC CTTGTTGCTT GACGCCCTCC CAGCGATGAT CTCCTATGTG
GATTCGGATC TTCGTTATCA GGAAGTTAAT GCGGCTTACG AACGTTTTTA TGGCCTGGGA
ACGGAGAGGA TTTTGGGCCG TAAAATTGAG GATATCCTTG ATCCCGAGAT CTTTAGCAAC
TTCCGGCCGT ATTGGGACGC GGTCCTGCGT GGTGAGACGG TAAGCTATGA GCGGGAGATT
GTTACCCCAG CGGGAGAACG CCGTATATTT CAGGGGGACT ACCACCCCCA TCAAGATCAT
CAAGGCGAAG TGTTTGGCTT CTACGCCATC GTCCGTGACG TCACAGATCG CCATCAGGCC
CAGACGGATT ACCTGACCGG CCTCCCTAAT CGGCGGAGGC TCGAGCGAGA TGGTTTCCTC
CAACTCACCC AGGCGCATCG CTACGATAAG GATTTGAGTT TCATGATGAT CGATTTGGAT
GACTTCAAGA GCTTCAACGA CCAATTTGGT CATCTATACG GGGACGAAGC GCTGAAAGCC
GTAGCCGAAC TTCTCCGGTC GGCAAGCCGG GACGCTGATA TTCCCGCCCG CTGGGGCGGT
GAGGAGTTCG CGTTGCTGCT TCCTGAAACT GATCTGGACG GAGCCAGGGA GGTGGCGGAA
CGTTTGCGAG CCCGGGTGGC GACCCTTGAT TTTGGCATGG GCCGATTTGT GACCGCGAGT
TTGGGCGTGG CTCAGGCCCG GGCTGAAGAC GATCTTTCTG CACTCCAGGA CCGGGCAGAT
CAGGCCTTAT ATAGAGCTAA GATGGCGGGG CGAAATCAGG TAGCTGCCGA GATCAAGGCG
GGCTAA
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| Protein sequence | MKAGNPVQQG RALDTLRSAL ARVSVGAMIT DAQLEPTGPC IVYVNPAWER LTGFSAEAVV
GSTPHILYGR ETSANALDDL RASLKEDGTA QSETVIYRRD GTRLNMAVSI SPLCLCGDGV
DHYLALQWDV TAHRETCARN RDLEALTRLQ RAVIMENLNI DSLRQRVANG ALEVTGAHAA
VVEEAEEGEM VYRAVAGMAE GQLGLRLPID QSASGLAYRS KEPVLVRDVD RDDRIQLKAK
AREIGFLSGI MVPLAQAGRI FGVLKVYANQ ADHFHERDQY FLEVASGVLA ANLHKAAEYA
SSEQRRTLLL DALPAMISYV DSDLRYQEVN AAYERFYGLG TERILGRKIE DILDPEIFSN
FRPYWDAVLR GETVSYEREI VTPAGERRIF QGDYHPHQDH QGEVFGFYAI VRDVTDRHQA
QTDYLTGLPN RRRLERDGFL QLTQAHRYDK DLSFMMIDLD DFKSFNDQFG HLYGDEALKA
VAELLRSASR DADIPARWGG EEFALLLPET DLDGAREVAE RLRARVATLD FGMGRFVTAS
LGVAQARAED DLSALQDRAD QALYRAKMAG RNQVAAEIKA G
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