Gene Dret_1469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1469 
Symbol 
ID8419298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1698229 
End bp1698552 
Gene Length324 bp 
Protein Length107 aa 
Translation table11 
GC content63% 
IMG OID645038044 
Productbranched-chain amino acid transport 
Protein accessionYP_003198334 
Protein GI258405592 
COG category[S] Function unknown 
COG ID[COG4392] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.656646 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0172198 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCAGC ACGCGGTCTT CCTGATTATT CTGGGCATGA TGGCGGTGAC CTATCTGCCC 
CGGGCCCTGC CGATGACGGT GTTGTCCTCG TTCAGTCTGC CCGATTGGGT GGTTCGCTGG
CTCGGATGCG TCCCCGCGGC GGTCCTGGCC GCCTTGTTGT TCCCGTCGCT TTTGCTCCGC
GATGGCGCTG TCAGCCTGGG GCTGGAGAAT ATTTTTTTGT GGGCCGCTGT GCCCACGTTT
GTGGTCGCCA AATGGCGGGG GAGCTTTGTC GGGGCTATTG TGACCGGGAT GGGCGTGGTA
GCCCTGGCCC GGCTGGCAGT CTGA
 
Protein sequence
MDQHAVFLII LGMMAVTYLP RALPMTVLSS FSLPDWVVRW LGCVPAAVLA ALLFPSLLLR 
DGAVSLGLEN IFLWAAVPTF VVAKWRGSFV GAIVTGMGVV ALARLAV