Gene Dret_1427 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1427 
Symbol 
ID8419256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1658581 
End bp1659549 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content62% 
IMG OID645038002 
ProductDNA polymerase III delta 
Protein accessionYP_003198292 
Protein GI258405550 
COG category[L] Replication, recombination and repair 
COG ID[COG1466] DNA polymerase III, delta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.000845045 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.101113 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCGAC CGGGCTTTCT TTTCTGTTTC TGCCCCGACA GCCAGTGGTT GCAAAAGCGG 
CTCACGGCCT TGCTCCAAAA GGACGGGGAG GTCTGGGACC GTCACATCTA TTGGGCGGAC
GAAGAGTTCC CCGAACGGTT GTGGGAAGAC CTGACCCTGA CCTCGCTGAT CGGGGGCAAA
CGGGCGGTCA TCCTCCGCCG GGCCGAGGCC CTTAAAGCTG AAGACTGGAA AAAGTTCAGC
CCCCTTCTGC GCAGTTTCAA TCCCCAGGTC TGGCCGATAT TCTGCCTTGA GCACGAATGG
AAACGAAGCA CCCCTTCCAT TCCCGCCGGT TTGCAGCACC GCCCGTTTTG GAAGCTGGCG
CAGCAAAAGA AATGGATCTG GCAGTCGCCT GGCCTGACGC GCGAAGCCCT GCCGGAATAC
CTTCAGCGCT GGGCTCGGGC TCGCTCGATA ACGCTTCCGG CCGTAGTACA GGAAAAGGCG
GCCCAACGCT TGCCCCTCCA GGTCGCCGCC CTTGACAATG AACTGGCCAA ACTTGAGCTT
CTCGCCAAGG ATCGCGGCAA CACACTCCAA CTCGAGGACC TGGAGGTCAT CACCCACGAA
CCGGACCTCG ACATTTTCGC GTTCATGAGT TCGCTCCAGG AGGGAGGCGC CAATCTCCAG
ATCTGGCGGA CCGTCTTCCA CGACCGCCTG GGCTCTGATT CCGAGATGGT CTTTCCCTTT
CTGGGCCTGT TGGTTCGCGA AGCCCGGCTC TTGTGGCAGC TTGAGTACGG GCCGGTGGAG
GGCATCCGGT TGCCGCACAG GGTCAAAAAC CGCAAGGCAG CCCTGGCCCG GCAGCTCGGC
GGCCCCCGGC TGACGCAAAT CTGGTCCTTG GCCCTGGAGG CCGAGGCCGG CATCAAGTCG
GGCGAGCGCA CCCCGGACCA GGCTTTGGAA ACATTGCTCA CCGGCCTGAT GCGCCTGTTT
CGCAGCTGA
 
Protein sequence
MSRPGFLFCF CPDSQWLQKR LTALLQKDGE VWDRHIYWAD EEFPERLWED LTLTSLIGGK 
RAVILRRAEA LKAEDWKKFS PLLRSFNPQV WPIFCLEHEW KRSTPSIPAG LQHRPFWKLA
QQKKWIWQSP GLTREALPEY LQRWARARSI TLPAVVQEKA AQRLPLQVAA LDNELAKLEL
LAKDRGNTLQ LEDLEVITHE PDLDIFAFMS SLQEGGANLQ IWRTVFHDRL GSDSEMVFPF
LGLLVREARL LWQLEYGPVE GIRLPHRVKN RKAALARQLG GPRLTQIWSL ALEAEAGIKS
GERTPDQALE TLLTGLMRLF RS