Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1293 |
Symbol | |
ID | 8419122 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1514794 |
End bp | 1515876 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 645037869 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_003198159 |
Protein GI | 258405417 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0697282 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.837718 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATCGCTT CAACTCCCTC TTGTACGACA CCGACGGCAA AGAGCAGGGC CCTGGTTGCC CTGCTCTTTG CTTTTGCGTG CCTGAGCCTT CTCAATCCGG TCTCGGGGTG GACCCAAAAC GGTCAGACGC CCCAGGACCC GACAGCCATC TTCCGCGAAG GCAGCAATGC CATGGCCTTG GGCAAACTGG ACAAGGCTGT GCAACTGTTC AAAACAATTC CTCGCCCCGA ATCCGGGGAA AGCGGCAAAC TTTTTGTCCA GAGCCGGATG CAATTGGCCC GAGTCTACTA CGCCCAGGAA GATCTGGACA AGGCGGCGGC CGCCTGTCGA GAGATCCTGG CTGTGTATCC GGACAATGCC GAAGCGACGA ATTTTCTGGC TTCGGTGGAG AAGGCCCAGA AGCCGTGGTA TATCCAGTTC TGGCAGGACA CGGTCCGATT TACCCCGGCC CTGGCCAAAG GGGCGGTGAT GACATTCGTG CTCGTTGTGG TGACGATGCT TGTCTCGCCG GTTGGGGGGT TGCTGGTCGC CCTGGGGCGG ATTTCCACCT TCCCGCCACT GATAGGATTG TGCTGGTTTT TTATCTGGAT CTTTCGCGGC ACTCCCCTGC TTTTGCAACT CTTTTTCATC TACTACGGCC TGCCGTCGAT GGGGGTCACC CTGTCGCCGC TGGTCGCGGC CCTGCTCGGA CTGGGACTCA ACTATTCGGC CTACCTGGCC GAGATCATCC GCGGCGCCAT CCAATCTATT GATTCCGGGC AAATGGAAGC GGCCAAGGCC CTGGGGATGA CCTACGGCCA GGCCATGCGC CGGGTGATCA TTCCCCAGAC CTACAAGCGG CTCATGCCTC CGGTCGGCAA TGAATTTATC GCCCTTATCA AGGATACGGC CCTGGTTTCG ACCATTGCCA TGGTCGAACT CATGCGCGCG GCAGACCAAT TGTTCAATAC CTATTTTGAC ATTACTGTTT TGGTCCTGGC GGCGATTATC TATCTCCTGT TCACCTCGGC ATTCACCGTG ACCTTTGAAA AAATCGAAAA GCGCGTGGGC GCCTATGAAA ACAGATACAC CCCCTCCCAC TAA
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Protein sequence | MIASTPSCTT PTAKSRALVA LLFAFACLSL LNPVSGWTQN GQTPQDPTAI FREGSNAMAL GKLDKAVQLF KTIPRPESGE SGKLFVQSRM QLARVYYAQE DLDKAAAACR EILAVYPDNA EATNFLASVE KAQKPWYIQF WQDTVRFTPA LAKGAVMTFV LVVVTMLVSP VGGLLVALGR ISTFPPLIGL CWFFIWIFRG TPLLLQLFFI YYGLPSMGVT LSPLVAALLG LGLNYSAYLA EIIRGAIQSI DSGQMEAAKA LGMTYGQAMR RVIIPQTYKR LMPPVGNEFI ALIKDTALVS TIAMVELMRA ADQLFNTYFD ITVLVLAAII YLLFTSAFTV TFEKIEKRVG AYENRYTPSH
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