Gene Dret_1260 details

Gene Information

• Locus tag: Dret_1260
• ID: 8419088
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfohalobium retbaense DSM 5692
• Kingdom: Bacteria
• Replicon accession: NC_013223
• Strand: +
• Start bp: 1477029
• End bp: 1478870
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 645037835
• Product: GTP-binding protein TypA
• Protein accession: YP_003198126
• Protein GI: 258405384
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.826692
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.0575842
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCTCAGA CTGTTCGCAA CGACCGGTTG CGCAATATTG CTATTATCGC TCACGTCGAC 
CACGGCAAAA CCACCCTCGT CGATGCCATG TTCCGCCAAA GCGGCCTGTT TCGCGACGAT 
CAGGAAACCG ACGATCGTCT TATGGACAGT ATGGATCTGG AACGCGAACG GGGCATCACC 
ATCGCGGCCA AGAACTGTTC GGTCATGTGG AATGGCGTGC GGATCAACAT CATTGACACC 
CCCGGCCACG CCGATTTCGG CGGGGAAGTG GAACGGGCCC TGTCCATGGC TGACGGCGCC 
ATCCTCCTGG TCGACGCCTC GGAAGGTCCC TTGCCGCAAA CCCGGTTCGT GCTCAGCAAA 
GCGCTGGACG CCAATCTGCC GATCATCGTG GTCATGAACA AAATCGACCG CCACGACGCC 
CGGCCCGATG AAGTGCTGGA CGAGATCTAC GACCTGCTTA TCGACCTGGG CGCCTCTGAG 
GAGCAATTGG AATTCCAGTT GCTCTACGCC ATCGGCCGCG ACGGCGTGGC CTCGCCCAGC 
CTGGAAGAGC CAGGGACAGA TCTGCATTGT CTTTTCGACG CTATTGTGGA TCAGATCCCC 
GGCCCGGCTT ATGACCCCGA AGCACCGCTG CAGATGTTGG TCTCGGATCT GGGGTACTCT 
GATTTTGTCG GTCGACTGGC GGTGGGGAAA ATCGCCAACG GCACCGTGCG GATCAAGGAC 
AACCTGGTCT GTGTCGGCGA GGGCGGCGTA GAGACCCCCC TCCGGATTTC CAAACTCCAG 
GTCTACGAAG GCATGCAATT GCGCGATGTG GAGGCGGTGG AGGCTGGGGA CATCGCGGTT 
ATTGCCGGCC TGGACACCAT CCGCATCGGC GACACCATCT GTCATCAGGT CGATCCCCAG 
CCCTTGCCGC GAATCACTGT GGACAAGCCC ACTGTAGCCA TGAAATTCAC AGTCAACGAT 
TCGCCCCTAA GCGGCCGGGA GGGCAAATAC GTCCAGTTCA GCCGTATCCG GGAGCGCCTG 
GAAAAAGAGG TGCTGGCCAA CGTGGCCATC GCCTTGGAGG ACGCCGAGAC CCGCGACACC 
ATCCTGGTCA AGGGACGCGG GGAATTCCAG CTCTCGATCC TCATCGAGAC CATGCGCCGC 
GAAGGATATG AATTCAGCGT CGGGCGGCCG GAGGTCATCT TTGTTTATGA AAACGGGCAA 
CAACTCGAGC CACTGGAACG GCTGCTGGTG GATTGCGAGG AGCAATTCAT GGGCGTGGTC 
ACGGAAAAGC TCTCCCTGCG CAAAGGCAAG ATGACCAATC TGGTCAACAA CGGCCAGGGC 
CGGGTGCGCA TTGAATTCTC CATACCCGCC CGAGGGCTTA TCGGTTACCG CGACGAGTTT 
TTGACCGACA CACGTGGCTC GGGACTGCTC CATTCCCGCT TTGACGGCTA CGGCCCTTAC 
CGCGGCGCCT TTCCCAGCCG TTACACAGGG TCCATAGTCT CCGATCGGGC CGGCACCGCG 
GTGCCGTATG CGCTGTTCAA CCTCGAACCC CGGGGGCAAC TCTTCCTTCA GCCCGGCGAA 
CCGGTCTATG AGGGAATGAT TGTCGGCGAG CACAACCGGG GACAGGATAT CGACGTTAAT 
CCGTGCAAGG AAAAGAAGCT GACCAATGTC CGGGCCTCGG GCAAGGACGA AAGCGTGACC 
CTGACACCGG TCAGACCGCT GTCGCTGGAA TTGGCCATCA GCTTCATCCG TGAGGATGAA 
CTCCTGGAAG TCACCCCCGA ATCCCTGCGC ATGCGCAAGA CCGAACTCTC GAGCCAGAAA 
CGCCATACCC AGTGGGCGCG ACAGCGCAAA AACGACAGCT AG 

 

Protein sequence

MPQTVRNDRL RNIAIIAHVD HGKTTLVDAM FRQSGLFRDD QETDDRLMDS MDLERERGIT 
IAAKNCSVMW NGVRINIIDT PGHADFGGEV ERALSMADGA ILLVDASEGP LPQTRFVLSK 
ALDANLPIIV VMNKIDRHDA RPDEVLDEIY DLLIDLGASE EQLEFQLLYA IGRDGVASPS 
LEEPGTDLHC LFDAIVDQIP GPAYDPEAPL QMLVSDLGYS DFVGRLAVGK IANGTVRIKD 
NLVCVGEGGV ETPLRISKLQ VYEGMQLRDV EAVEAGDIAV IAGLDTIRIG DTICHQVDPQ 
PLPRITVDKP TVAMKFTVND SPLSGREGKY VQFSRIRERL EKEVLANVAI ALEDAETRDT 
ILVKGRGEFQ LSILIETMRR EGYEFSVGRP EVIFVYENGQ QLEPLERLLV DCEEQFMGVV 
TEKLSLRKGK MTNLVNNGQG RVRIEFSIPA RGLIGYRDEF LTDTRGSGLL HSRFDGYGPY 
RGAFPSRYTG SIVSDRAGTA VPYALFNLEP RGQLFLQPGE PVYEGMIVGE HNRGQDIDVN 
PCKEKKLTNV RASGKDESVT LTPVRPLSLE LAISFIREDE LLEVTPESLR MRKTELSSQK 
RHTQWARQRK NDS