| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1238 |
|---|
| Symbol | |
|---|
| ID | 8419066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1452321 |
|---|
| End bp | 1454372 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645037813 |
|---|
| Product | Cyclopropane-fatty-acyl-phospholipid synthase |
|---|
| Protein accession | YP_003198104 |
|---|
| Protein GI | 258405362 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2230] Cyclopropane fatty acid synthase and related methyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.306171 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.747537 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCTTCT CGCGCCTGTA TACCGCCTTG TTGCGCCATG AGCGCAGCAC GACCGCGTCC
CACGCTTTTA CCTACAAAGT CCCGGTCTTT GTTTTTGATC TCGCCGAACT CGACCACGAC
CGGCTGGAGA ACGTGCTTTT CGCCCGCCAC CGCGCTTCGG GCAAGGCACA ACGTTGTTCC
CGGGCGCGGC ACCGGCTCTT GTCCGTTGAG GAATCCGATT ATCTCTACCC CGGGCCCCAG
TCGCTTCGGA CCAAGCTGGC CCGCGCTCTG AGCGCCGGGG GGCTGGAGCC GGAACTGGCC
TGGCAACGGG TCTGGTTGGT GACCTCGGCC CGCTTCTGCG GCCGGATCTT CAATCCCGTT
AATTTCTGGA TCATCACCGG CGGAGCCCGA CCGGCCTCAT GCCTGGCGGT GGTCGTCGAG
GTCAACAACA CCTTTGGCGA AAAACACCTT TATGTCCTGG GTGACGGTGC CGAGCAGCCC
TTCCCGGCCC GCTTTTCCGC TCCTAAGAGG TTCCACGTCT CTCCGTTTAA CGATATGCAG
GGCGACTACG TTTTTCTCAT CGGTGATCCG GAATGGGGTG TGGACATCTG TATCGATCTC
CAGCGCGACG AGCGCCGAGT CCTTCAGGCC CGGCTGTGGT CCGAAGCACG CGGGAGGCCG
GTGCGCAGTC TGCCCTTGGC GGCCTTTCTT CTCCACCCCC ATCGCGTGCT GACCTATCCG
CGTATTTTGC GCCAGGCAGC CAGTCTCTAT TTTCGACGCC GCCTGCCCGT GCACCGTAAA
CCAGAACCGA GCAGCCCGAT GACCATTCGT ACTGCGTCCC GTGGCAGACC GGACCTCATG
GCTCGGCTGA TGCGACGGAT CCTGAGCCTG GTGTTGCGAA ATATCCGGTT CGGCCGGCTG
CATTTGATCC ATCCGGATCA GACCGAGGAA CGTTTCGAGG GATCACAGCA GGGTCCCGAC
GTCTGCCTGC GGGTGACTGA CAACCGCTTC TATCGCCGTC TGGCTGCGAG CGCGGATATC
GGCTTCGGGG AGGCCTATAC CGAAGGGTGG TGGGAAACGT CAGAGCTGAC CGAAGTGATC
CGGTTTTTTA TCCTCAATCG CGAGCAGATC CGCTTGTCGC AGACGCTGCA CCTTCCCGAC
CGCCTGGTGG CGTTTGCCGG AAAGCTCCGT CGCCTGGGAG GGCGGCGCAA TACCCGCAGC
GGCGCCAGAG ACAACATCCT GGCCCATTAC GATCTGGGCG ACACCTTGTT CGCGACCTTT
CTCGACCCGA GCATGGCTTA TTCCTGCGCC TGGTTCGAAA GGCCTGACTT CAGCTTGAGC
GAGGCTCAGG AAGCCAAATA CCGCCGCGTG TGCGAGCGTC TGGAACTGAA GCCCGGTGAC
CGGGTTTTGG AGATCGGGTG CGGCTGGGGC GGCTTCGCCC TTTTCGCTGC CCGCCACTAC
GGCTGCCGGG TCGACGGGGT GACCATCTCC GACAATCAAT ACTCTTTTGC CTGCAACGCG
GCCCGGGATC TGGGCCTCAC CCATCTGGTC GCCTTTTATC GTATGGATTA CCGGGATATC
GAGAACAGGT ATGACAAGAT TGTTTCCATT GAGATGTTCG AGGCCGTTGG CCACGCCTAC
CACAAAGCGT TTTTCGCCGC TCTGGATCGG CTGCTGGTCC CCGAGGGGCA GGTCTTTCTC
CAATTCATCG CCATCTACGA CCAGCGCTAC GAGGCCTACC TCAGGGAGGG CGACTGGATT
CGCAAGCATA TCTTTCCCGG TGGTCTGCTC CCCTCTTTGG CGCGAACCCT GGAGGCCATG
CGCGACGCCA GCGGATTCAC CGTGCGCTGG CTCGATGCCA TTGGCCCGCA TTACGCCAGG
ACATTGCACT TGTGGCGGGA CAATTTCCTG GCCTGCAGCG ACAAGCTCGA GGCCTTAGGG
TACGACGCGG TGTTCCGCCG CACCTGGGCG CTGTATTTTG CGTATTGCGA GGCCGGATTC
GCCACCCGGG TCATCGATGA CTATCAGATG CTCCTGGCCC GGCCCGAAGG GACTGCGCCC
AAGTCGCGCT GA
|
|---|
| Protein sequence | MTFSRLYTAL LRHERSTTAS HAFTYKVPVF VFDLAELDHD RLENVLFARH RASGKAQRCS
RARHRLLSVE ESDYLYPGPQ SLRTKLARAL SAGGLEPELA WQRVWLVTSA RFCGRIFNPV
NFWIITGGAR PASCLAVVVE VNNTFGEKHL YVLGDGAEQP FPARFSAPKR FHVSPFNDMQ
GDYVFLIGDP EWGVDICIDL QRDERRVLQA RLWSEARGRP VRSLPLAAFL LHPHRVLTYP
RILRQAASLY FRRRLPVHRK PEPSSPMTIR TASRGRPDLM ARLMRRILSL VLRNIRFGRL
HLIHPDQTEE RFEGSQQGPD VCLRVTDNRF YRRLAASADI GFGEAYTEGW WETSELTEVI
RFFILNREQI RLSQTLHLPD RLVAFAGKLR RLGGRRNTRS GARDNILAHY DLGDTLFATF
LDPSMAYSCA WFERPDFSLS EAQEAKYRRV CERLELKPGD RVLEIGCGWG GFALFAARHY
GCRVDGVTIS DNQYSFACNA ARDLGLTHLV AFYRMDYRDI ENRYDKIVSI EMFEAVGHAY
HKAFFAALDR LLVPEGQVFL QFIAIYDQRY EAYLREGDWI RKHIFPGGLL PSLARTLEAM
RDASGFTVRW LDAIGPHYAR TLHLWRDNFL ACSDKLEALG YDAVFRRTWA LYFAYCEAGF
ATRVIDDYQM LLARPEGTAP KSR
|
|---|
| |