| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1153 |
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| Symbol | |
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| ID | 8418981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1354844 |
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| End bp | 1357654 |
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| Gene Length | 2811 bp |
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| Protein Length | 936 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645037728 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003198019 |
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| Protein GI | 258405277 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.90611 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGACTCCA CACGTCCACA AACGAACGAA ACAAAACCAC GCACATTGCA GCGCTTTCTG
CTTTGGATTG CTGCCTTATG CGGCGTTTTA ATCGGCTCAG GCAGTGCATT TCTGGTACTT
GTATATGGCA CGGAGATTTT TCAAATATCT CCGCAGTGGG CATTGACGGT GTCCTTTGCT
GTACTTTTTC TGATTTTTAG TGAAATCTAT ATCCTTACCA AAATCCGCCT CTCTCTCATT
GACGACCCAG ACAAACACAG CTGGCCCGAA CTCAAACGGA TCATCCAGTC CTCCCCCTCT
CCCGTCCTGA TTACTGACTC GTCCGGCAGC GCCCTCATCT ACAACAAACA GTTTGCGGAG
CTCTTTAGGC TCAGTCCTGA TGAGGACGTG AACATCCTCA CGGATCAACG AACAGCTCCG
TTGAACCTTC AACTCCCTTT TTCTCAGGCC AATCTTGGCG AGACCTCGGT ACTGCCTGAA
ACGTGGCACA CTTTGCCCCC ATCTGACGAA TCCTCGGCAT CCAAAAAGAT CTGCGTTCAA
ACCACCTTTG TCCCCATGCG CAACTCATCC GGCCTGGTGG ACAAGATCCT TATTACTTTC
GAAGACTCTA CTGAACGAAA ACGTTTAAAC GAGCTTACCT ACCAGGAAAA AGCTCGCCTC
CGGGCCGCTC TGGCAAACTC CCGGCAAGGA GTCTGCGAGA TCGATCCGGA GGCAAACGCA
ATATACTTGG ACCTGCACAA TGTTTGGGAT CATGCTGTAA AACCATCCGC TAAAACTAAG
TATCGAAAAT CGTTTGACAA TTTAATCCAT CCAGATGACC GACAAGGACT GCTAGAATTA
GGCAAAAACC ATACTCCTCA AGCTGATGGA CAGTTACGCT CATGCTTCCG TTTTCAGTCT
CAAAGTAAAG AATGGCGTTG GCTCCAGTTC AGGGGCAAAA CCTTACCCCA CTATTCATCC
GGCTACCCTG TACTTATAGG CACAGTAGAA GACATAACCA GTGAAATGGA AACCGCCAAA
AATCTTGAAA AATCTGAGGC GAGATACAGA AACCTCTTTG CCAATGCCTT GGAGGGGATG
TATTTGATTG GTACGGATGA TTCAGTAATA TGTGTCAATC AGGCTTTTGC AGATCTTTTA
GGATATGCTT CGCCTAAAGA CTTCGAAACG AGCAACAGAG GAAAAAAATT TTCCAGGATA
TATGAAACAC CTACGGTGAA TAAGAACAAG TTCAATGCGT TATGGACAAA AGGTAAGATT
ATGCATCTGG AGACCCAGGT CCGTCGCAAA AACGGAGAGC TGATTTGGAT CTCAGAAAAC
ACCAAGATTG TCAAAGATGA TCACAAAAAC ATACTCTATT TACAAGGTAC TATAATAGAC
ATTACCGAAC GCAAAAAAAG CGAAGAGCGC CTTTTGCACC AAGCCTTGTA CGATCACAGG
ACCAATCTTC CCAACCGGTC CTATTTTGTA GAAAAAATCG AGAAAGGACT TAAAAGGGTG
GGCCAAGAAC CCGGTTTTTC ATTTGGCCTG CTCTATTTTG ATCTCGACGG GTTTGGAACA
ATCAACGACA GTTTCGGGTA TTTTGTTGGA GACCGTTTAC TCTTAGAAGT TTCCCATCGT
ATCCGGACTG CCATCGATGA AACTGACACC CTGGCCCGGT TCAGTTCAGA TGAATTTTGT
GTGATGTCCG AAAACAGAAC CTCAGCTCAA ATTCAGGACT TGGCGGAAAA TATACGGCAA
AAGCTGGAAC AAGTTTTTTT TCTGGACGGC CAAGAAATCA CTCTTACTAC CAGTATCGGT
ATTCTTGAGT ATAATGTGAC GTACACCAGA GCTGAAGATA TGCTCCGGGA TATTGAATTG
GCCATGCTAC AAGCCAAAAA GCGTGGCAAA AATCGCTGGG TAATTTTCTC CTCAGATATG
TATCAACGCA AGAGCGAACG GACGCTCATG GAAAAAGACC TGCGCCGGGC TTTGGATCGA
GAAGAGTTGG TGCTCAACTA TCAGCCTATT ATTAAATTGG ACAGTGGCGA ATTAAACAGC
TTAGAGGCCT TGATACGTTG GAAACACCCT GAACATGGGT TTATCTCGCC CGGGAAGTTC
ATACCATTGG CGGAACAAAC CGGTCTTATT GAGCCCATCG GCAAGTGGGT CTTAAAAGAA
GCATGTCGGC AGGTCAAAAT CTGGCGTGAA TCCAACAAGT CCTTGATCAT GAATGTAAAT
CTTTCCAGCA AACAGCTGGA AAAGGCCGGT CTGGAACGAA ATATTTATCA AATCCTGCAG
GACATAAACC TTGATCCTGC ATGCCTCAAC CTGGAGGTGA CAGAATCCGC GGCCATGAGC
AAACTCGAAT CCAATGTTCG TACTCTCAAG CGGCTAAAAT TTATGGGGAT TCGCTTGAGC
ATTGACGATT TTGGAACCGG CTACTCTTCC CTGGCCCACT TGCAACGCTT CCCCTTGGAT
GAACTGAAAA TTGACCGCTC GTTTATTATC AGTCTCAAAG CCGGGAAAGC GTGTCATCGA
ATAGTACATG CTATTGTTGA ACTCGCTTTA GGGCTCAAGC TTAAGATGGT GGCTGAAGGG
ATTGAAACCA ACTCTCAACT GAACATGGTC AAAACATTCA ATTGTCATTA CGGCCAGGGC
TTTTTGTTTT CCAAAGCAAT GGCCGCAAAT GAAATTGAGA AAAACTGGTT CACTGTAGGA
AAGGAAAGAC CTTTCGCTTT ATCGCAAGCC ATGAAAGCGG CAAATCCAGA CCCACAGCCC
AATGACAGCA GAGCCAGCCT AAAAACGATT CACAAAATCC ATCAGGCATG A
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| Protein sequence | MDSTRPQTNE TKPRTLQRFL LWIAALCGVL IGSGSAFLVL VYGTEIFQIS PQWALTVSFA
VLFLIFSEIY ILTKIRLSLI DDPDKHSWPE LKRIIQSSPS PVLITDSSGS ALIYNKQFAE
LFRLSPDEDV NILTDQRTAP LNLQLPFSQA NLGETSVLPE TWHTLPPSDE SSASKKICVQ
TTFVPMRNSS GLVDKILITF EDSTERKRLN ELTYQEKARL RAALANSRQG VCEIDPEANA
IYLDLHNVWD HAVKPSAKTK YRKSFDNLIH PDDRQGLLEL GKNHTPQADG QLRSCFRFQS
QSKEWRWLQF RGKTLPHYSS GYPVLIGTVE DITSEMETAK NLEKSEARYR NLFANALEGM
YLIGTDDSVI CVNQAFADLL GYASPKDFET SNRGKKFSRI YETPTVNKNK FNALWTKGKI
MHLETQVRRK NGELIWISEN TKIVKDDHKN ILYLQGTIID ITERKKSEER LLHQALYDHR
TNLPNRSYFV EKIEKGLKRV GQEPGFSFGL LYFDLDGFGT INDSFGYFVG DRLLLEVSHR
IRTAIDETDT LARFSSDEFC VMSENRTSAQ IQDLAENIRQ KLEQVFFLDG QEITLTTSIG
ILEYNVTYTR AEDMLRDIEL AMLQAKKRGK NRWVIFSSDM YQRKSERTLM EKDLRRALDR
EELVLNYQPI IKLDSGELNS LEALIRWKHP EHGFISPGKF IPLAEQTGLI EPIGKWVLKE
ACRQVKIWRE SNKSLIMNVN LSSKQLEKAG LERNIYQILQ DINLDPACLN LEVTESAAMS
KLESNVRTLK RLKFMGIRLS IDDFGTGYSS LAHLQRFPLD ELKIDRSFII SLKAGKACHR
IVHAIVELAL GLKLKMVAEG IETNSQLNMV KTFNCHYGQG FLFSKAMAAN EIEKNWFTVG
KERPFALSQA MKAANPDPQP NDSRASLKTI HKIHQA
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