Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1055 |
Symbol | |
ID | 8418880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 1246362 |
End bp | 1247924 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 645037627 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_003197921 |
Protein GI | 258405179 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.144567 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0392371 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAGG ATCTGCGAAC AACGTCACGG CGCACGACGG CGACGTGGCA GAATCTGGAA AACAAGATAC TGAAATACGA TATACATCCA TGGGTGTTTT TCGGCGGCGG GGCGGTTATC ATCCTCGGCG TGGCTTTGAC CTTGATTGCA GGCGAGACGG CCTCGACCTT ATTCAGTTCC GTGCAGACCT GGATTGCCAC ATATACCGGT TTCTTTTTCG TGCTGGTCAT GAACGTGGTC CTGGTCTTCT GCTTTTTCCT CTTATTCACC AAAATGGCGT CGATGCGCAT CGGCGGAGAG GACGCTGAGC CGGAATTCTC CACCATGGGG TGGTTCGCCA TGCTTTTTAG TGCTGGAATG GGTATCGGGA TCCTTTTCTA CGGGGTGGCC GAACCCATGT TCCACTATGT GGCCAATCCC CTCTCAGAAC CCGGTTCTCC TGAAGCGGCG CGCATGGCCA TGGAATTGAC CTTCCTGCAT TGGGGCCTGC ACCCTTGGGG TATTTATGCC CTTGTCGGCC TCGGCCTCGC CTTCTTCGGC TTTTCCGAAG GACTACCGCT TTCCATCCGT AATATTTTCT ATCCCCTGCT TGGCGACAAA ATTTACGGCC CCATCGGTAA TTTGATCGAT GTCTTGGCCA CGGTGGCAAC GCTGTATGGG GTGGCGACTT CCCTGGGGCT CGGGGTCCAA CAGGTCAATG CCGGACTGGC CCATTTGTTT GGCATTCCGC AAAATCCCTG GGTTCAATGC GGCTTGATTG CCTTGATCAC CGCCATTGCG ACCTGGTCCG TCGTTCGCGG CCTGGACGCG GGCATCAAAT TTTTGAGTGA ATTGAACATG GCCGCCGCCG GGTTGCTGAT GCTCTTTGTC CTCTTGTTGG GGCCGACCCA ATTTATCCTT AACGGTATTT TGGAGAATAT TGGGAATTAT ATTCAGGATT TTGCGCATCT TGCCACCTGG AACGAGACCT ACACCAACGG CGAATGGCAA AACGGCTGGA CGGTTTTTTA CTGGGGCTGG TGGATCGCCT GGTCTCCGTT TGTGGGCATG TTCATCGCCC GGGTTTCCTA TGGCCGGACC ATCCGGGAAT ACCTGCTCGG CGTTCTGCTT GTTCCCGTCG CTGTGACCTT TGTCTGGATG ACCGTGTTCG GCAACAGTGC TTTGTTCATC GAGCATTTCG GGGCTGGGGG ACTGGCCAAG GCGGTACAGG AGAACATTCC TGTCTCCTTG TTTGTCTTTT TGGAACATTT TCCCTTGTCT ATGCTGACCT CCCTTTTGGC AGTCGTTGTC GTCATCACGT TTTTTGTGAC CTCCTCTGAC TCCGGGTCCA TGGTCATTGA CATCATCACC GCCGGAGGTA ACCCGGATCC GCCGACTCCG CAGCGCCTGT TCTGGGCCGT TTTGGAAGGC GTTGTCGCTG CGGTCCTGTT GCTCGGCGGC GGCCTGGTCG CCCTGCAGAC AGCCGCCATC ACAACCGGGT TGCCGTTTGC GGTGGTCATA TTGATGATGT GCTGGGCCGT GTATCGCGGT CTGCATGACC ATTGGATGCG CTACTACGAC TAA
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Protein sequence | MSEDLRTTSR RTTATWQNLE NKILKYDIHP WVFFGGGAVI ILGVALTLIA GETASTLFSS VQTWIATYTG FFFVLVMNVV LVFCFFLLFT KMASMRIGGE DAEPEFSTMG WFAMLFSAGM GIGILFYGVA EPMFHYVANP LSEPGSPEAA RMAMELTFLH WGLHPWGIYA LVGLGLAFFG FSEGLPLSIR NIFYPLLGDK IYGPIGNLID VLATVATLYG VATSLGLGVQ QVNAGLAHLF GIPQNPWVQC GLIALITAIA TWSVVRGLDA GIKFLSELNM AAAGLLMLFV LLLGPTQFIL NGILENIGNY IQDFAHLATW NETYTNGEWQ NGWTVFYWGW WIAWSPFVGM FIARVSYGRT IREYLLGVLL VPVAVTFVWM TVFGNSALFI EHFGAGGLAK AVQENIPVSL FVFLEHFPLS MLTSLLAVVV VITFFVTSSD SGSMVIDIIT AGGNPDPPTP QRLFWAVLEG VVAAVLLLGG GLVALQTAAI TTGLPFAVVI LMMCWAVYRG LHDHWMRYYD
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