Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0998 |
Symbol | |
ID | 8418820 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 1171384 |
End bp | 1173027 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 645037567 |
Product | pseudouridine synthase, RluA family |
Protein accession | YP_003197864 |
Protein GI | 258405122 |
COG category | [H] Coenzyme transport and metabolism [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0237] Dephospho-CoA kinase [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family [TIGR00152] dephospho-CoA kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.012801 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCGTCACA GGGTCCCAAA CGATGTTCAA GAAGAGCACG CCTTTGTCGT TGAGGCAGGC GAGGCCGGAA AACGGTTGGA TAAGTTTTTG AGTGACCGTC TTGCCGATCT GGGCGTCTCC CGCTCTCGGA TCAGCCAGTG GATTCGGCAG GAACGGGTGC GAGTCGCAGG GGCACTGTGC CTGCAGGGCA AAACCAAAGT CCTCAATGGT CAAAAAGTGG TCCTGCTGGC CCCGTCTCTG CAGAGCGGGA TCAAGCCCGA AGTCGGCCCG GTCGAGGTGG TCTACAGCGA TCCGGATGTG GTGGTCGTGA ACAAGGCGGC CGGAGTCACG GTCCATCCCG GCACCGGGTG TGAATCCGGA ACCCTGGTTC ACCATCTGGC AGCGTTGTAT CCGGAACTCG CCCGCTTTGA CGGGGAGCGT CCCGGCGTGG TCCACCGTTT GGACAAGGAT ACTTCAGGCC TGCTCACCGT GGCCCTCAAT GAATCCGCCC GGCTGGCACT GACGCGGAGT TTTGCCAGAC GGGAGGTGGA CAAGGAGTAT CTGACGCTTG TCCATGGACG CCCTGAGGCC GAAGGCACGG TGGATCATCC CCTGGGTCGG GACCCGCAAA GCAAGATCCG TATGGCCGTC GTTCCTCGCG GGGGCAAGGA GGCCCTGACA CGCTTCAAAA GGGTCTGGAC CAGTCCGGAT GGCAGGGTCA GCCTGCTTCG AGTGCGCATT TTGACCGGGC GAACCCATCA GATCCGGGTC CATATGGCGT ATCTGGGTTT TCCTCTGGTC GGAGATGCGC TCTATGGTCC CCAGGCCCAG GCCGCATTTC AGCGCAGCCG TCCCCTTTTG GCCCGTTTGG CCAAACACCA TATGCTCCAC GCGTGGCGCC TGGCATTTCC CCATCCCCGG AGCGGGCGAA TGGTGTGTTG CGAGCAGGCC ATGCCCAAGG CGATGTGGCG GCTTGTTCTC GGATGCGGCA GGCGTGTCCA GCGGGTTGGT CTGACCGGGA TGCCTGGCTG CGGCAAATCA GCCTTGCTCA GCGAACTGAG CGACCGTGGT GTGTTGACCT GGAGCGCGGA TCAGGAAGTG CGGGCGCTCT ATGCTCCGGG AGGCGACGGG GCGGACTTGT TGGCGCGCCG CTTCGGCGAC GAAATCCTGG ACGACAGCGG CGGAGTGGAT AAAAAAGCCT TGCTGGCCCG GATGCAATCC CGGCCGGGAC TGCACCGCGA GGTCGAAGAG CTGATCCATC CCCTGGTCCG ACACCGGCTG GAGGCGTTCT GGACGCAGAC CGGAAATTTC CGATTGGCTG TAGCGGAAGC GCCATTGCTT TTTGAGGCTG GGTGGTCCGC AGCCAGGGAA TTTGATGTGG TCGTGGGGGT GCATTGTTCC CGCCGGGTTC GTCGTGCCCG TCTCCAGGCG TCGCGTGGCT GGTCCGAGAG CATGCTTTCC GGGTTGGAGT CCTGGCAGTG GACGCCGAGG GCCAAACTGT CCCGCTGTCA GTTTATAGTG CCCAATGATG AGGACAGGCA TATGTTGGCC CGGCGGGCGG AGATGCTTAT GGAATTGCTC CGCAGACGCC GCTTGCGGCA GATACGGTCT TTGTGGCAGG ACTTGCAAGT CTACCGGCAC AGCAGGGCCG TTCTCGACCC GTGA
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Protein sequence | MRHRVPNDVQ EEHAFVVEAG EAGKRLDKFL SDRLADLGVS RSRISQWIRQ ERVRVAGALC LQGKTKVLNG QKVVLLAPSL QSGIKPEVGP VEVVYSDPDV VVVNKAAGVT VHPGTGCESG TLVHHLAALY PELARFDGER PGVVHRLDKD TSGLLTVALN ESARLALTRS FARREVDKEY LTLVHGRPEA EGTVDHPLGR DPQSKIRMAV VPRGGKEALT RFKRVWTSPD GRVSLLRVRI LTGRTHQIRV HMAYLGFPLV GDALYGPQAQ AAFQRSRPLL ARLAKHHMLH AWRLAFPHPR SGRMVCCEQA MPKAMWRLVL GCGRRVQRVG LTGMPGCGKS ALLSELSDRG VLTWSADQEV RALYAPGGDG ADLLARRFGD EILDDSGGVD KKALLARMQS RPGLHREVEE LIHPLVRHRL EAFWTQTGNF RLAVAEAPLL FEAGWSAARE FDVVVGVHCS RRVRRARLQA SRGWSESMLS GLESWQWTPR AKLSRCQFIV PNDEDRHMLA RRAEMLMELL RRRRLRQIRS LWQDLQVYRH SRAVLDP
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