| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0885 |
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| Symbol | |
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| ID | 8418704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1047613 |
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| End bp | 1049814 |
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| Gene Length | 2202 bp |
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| Protein Length | 733 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645037454 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_003197754 |
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| Protein GI | 258405012 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACGCA TCAACGATAT TCTGGAAAAA GTTTCGGCCT ATCTGCCGAA ATCTGAACAG
GCCCTGATCC AAAAGGCCTA TGTCTTTTCT GCCTCGGCCC ATGCCGGACA ACGGCGGTTG
TCCGGAGAAC CCTATCTGTC CCATCCCCTT GAAGTGGCCC ACATCCTGGC GGAACTGCGG
TTGGATGCCC CGACCATTGC CGCTGGCCTC CTCCACGACA CGCTCGAGGA CACGCAGTCC
AACGTCAGTG ATCTTGAAGA GCAGTTCGGT GAGGAGGTCG CCCAGATTGT CGAAGGGGTG
ACCAAGATCG GGAAAGTCCG GTTTACGTCC AAAGAGGAGG CCCAGGCGGA AAATATCCGG
AAGATGATTC TGGCCATGGC CGAAGACATC CGGGTCATTA TCGTCAAACT GGCTGACCGT
TTGCATAATA TGCGAACCCT GCAGCATCAG AAGGGGATCA AACAGCGGCT GATTTCCCAG
GAAACTATGG AGATTTATGC CCCTTTGGCG AACCGACTCG GTTTGTACCG GGTCAAAGTG
CAATTGGAGG ACATCAGTTT TCAGTACCTG CGGCCCGACG TGTATTACCA GATCAAGTCT
GGTGTGGAGC AGCATCAGAC CCTGGGGCAG CAATATATTG AGCGGGTGAC CGGACTTATT
CAGTCTATCT TGGACGAGAA TTCCATTCCC GGCCGAGTCT CGGGGCGGCA GAAGCATTTG
TATTCCATTT TCCACAAGAT GCAGCGCCAG GGGCTTTCCC TCGATCAGGT CCACGATCTG
GTGGCCTTCC GGGTCATCCT GAAATCGGTC CGGGATTGTT ATGCTGTCTT GGGGCTGATC
CACTCGATCT GGAAGCCGGT ACCAGGGCGG TTCAAGGATT ACATCTCCAT GCCCAAGGCC
AATATGTATC AGAGCCTGCA TACGACGGTC ATAGGCCCTG ACGGCGAGCG GATCGAGATC
CAGATCCGCA CTGAGGAGAT GCACGAAATC AATGAATACG GTATCGCGGC GCACTGGAAA
TATAAGGACG GGTCCAATCT CAGCGAACGG GATGCGGACC GGTTCCGCTG GTTGCGGCAG
ATACTGGACT GGCAGAAGGA GCTCAAGGAC CCCCGGGAAT TCATGGCCTC GCTCCGCTTC
GATCTTTTTC AGGACGAGGT GTACGTCTTC ACGCCACGCG GTGAGGTTCG GGAACTCCCG
GATGAAGCGA CCCCAGTCGA TTTTGCGTAC ATGATCCACA CCGAGGTCGG CAATCATTGC
GCCGGCGCCA AGGTCAACGG CAAGCTGGTC CCTTTAGACA CGGCTCTGAA AAACGGTGAT
ACTGTTGAAA TCATCACCGA CGAAAAGCGT TCCCCCAGCC GGGACTGGCT CAAATTCGTC
AAGACGGCCA AAGCCCGCAC ACGCATCAAG CATTGGATCC GCACCGAAGA GCGGTCGCGG
TCCATTGCTC TGGCCAAGGA GATGCTGGAA AAGGAAGGGC GGCGTATCGG GGTCAATTTC
AAAAAATTGA TGAAGGAGCG CAGCCTCGAA CCGGTGGCGG AAGAGTATTC TTTTCGCAGT
GTTGACGATC TGCTTTCCGC CGTGGGCTAC GCCAAGCTCA CGCCCAGGCA GATTTTGAAC
CGCTTTCTGC CCAAACCGGT GGCTGAAGAA ACACCGGAAC GGCAGCGGGG CAAGAAGGAA
GACAAGGAAG CGCCGCGGAA AACCGAGGGG AAGGCCCGTC AGGAAGGGGT GAACATCAAA
GGCGTCGACG ATGTCCTGGT CCGCTTTGCC CAGTGTTGCC AGCCACTGCC CGGCGATCCC
ATTGTCGGGT ATATCAGCCG TGGACGGGGC GTTACGGTCC ACAAATCGGA CTGTAGCAAT
GTGCAGGGGT TGGAACCGGA ACGGCTGCTC AACGTCACCT GGGAAGGGGA AAAACAGGAT
TCCTTTCCGG CTACAATCCA GATGCTGTGC CGCAATGAAA TGGGCGTGCT CCAATCGATC
ACGGCCCTTT TGACCGAGCG GCAAGTCAAT ATTGATTCCG GCCACTTTCG TTCCGATGTC
GATGGCAATT CCGAGGTCGT GCTCACGGTC CAGGTCCAGG ACACGGACCA TCTGTACAAG
ACTATTGACG CCATCAGCCG GATTCCGGCA GTAGTTGAAG TGGTGCGGAA AAGTCGCCAG
GAAAAATCAT TACCCGGTCA ACGCAGCAAC CCGGAACACT AA
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| Protein sequence | MIRINDILEK VSAYLPKSEQ ALIQKAYVFS ASAHAGQRRL SGEPYLSHPL EVAHILAELR
LDAPTIAAGL LHDTLEDTQS NVSDLEEQFG EEVAQIVEGV TKIGKVRFTS KEEAQAENIR
KMILAMAEDI RVIIVKLADR LHNMRTLQHQ KGIKQRLISQ ETMEIYAPLA NRLGLYRVKV
QLEDISFQYL RPDVYYQIKS GVEQHQTLGQ QYIERVTGLI QSILDENSIP GRVSGRQKHL
YSIFHKMQRQ GLSLDQVHDL VAFRVILKSV RDCYAVLGLI HSIWKPVPGR FKDYISMPKA
NMYQSLHTTV IGPDGERIEI QIRTEEMHEI NEYGIAAHWK YKDGSNLSER DADRFRWLRQ
ILDWQKELKD PREFMASLRF DLFQDEVYVF TPRGEVRELP DEATPVDFAY MIHTEVGNHC
AGAKVNGKLV PLDTALKNGD TVEIITDEKR SPSRDWLKFV KTAKARTRIK HWIRTEERSR
SIALAKEMLE KEGRRIGVNF KKLMKERSLE PVAEEYSFRS VDDLLSAVGY AKLTPRQILN
RFLPKPVAEE TPERQRGKKE DKEAPRKTEG KARQEGVNIK GVDDVLVRFA QCCQPLPGDP
IVGYISRGRG VTVHKSDCSN VQGLEPERLL NVTWEGEKQD SFPATIQMLC RNEMGVLQSI
TALLTERQVN IDSGHFRSDV DGNSEVVLTV QVQDTDHLYK TIDAISRIPA VVEVVRKSRQ
EKSLPGQRSN PEH
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