| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0859 |
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| Symbol | |
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| ID | 8418678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1017227 |
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| End bp | 1019641 |
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| Gene Length | 2415 bp |
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| Protein Length | 804 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645037428 |
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| Product | homocysteine S-methyltransferase |
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| Protein accession | YP_003197728 |
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| Protein GI | 258404986 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase
[TIGR02370] methyltransferase cognate corrinoid proteins, Methanosarcina family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000329444 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.146867 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGCTT TTCGCAAGGC TTTACAGGGG AACAAGGTAC TGATTTTTGA TGGGGCCATG
GGCACCTTGT TGCAAAGCCG GGGCCTTGTT CCAGGGCAAT CTCCTGAGCA GTTCGGGCGC
TCAAACCCCG AAGCGGTGGC TGCGGCACAC AGGGATTACC TGGAAGCCGG AGCTGATGTG
ATCACCACCA ATACGTTCGG GGGAACGGCC TACAAACTTG GAACGGATAT CGATGTCCGG
GCGTTCAATG CCCAGATGGC TGCTGTGGCC CGCAAAGAGG CGGGGGACAA GCATTTTGTC
GCCGGCAGCG TTGGGCCCAC CGGACATATG GTCCGCCCGC TGGGAAACGT GGGGTTCACA
GATCTGGTCC AAGCGTTTCG GACTCAGATT CGTGGTCTGG TGGAAGGCGG CGTGGATTGT
ATTCTGGCGG AAACCCATTT CGATCTTGCC GAAGCCAAGG CTGTCGTCGT GGCGGCCCGG
CAGGAGTGCG ATCTGCCTGT TGGCGTGTCC ATGACCTTTG AAGGCGGCTG CAGTCTGACC
GGGACGCCGC CGCATTGTTT TGTGGACACC ATGCAGAATC TTGACGTGGA CCTCTTGGCT
ACCAATTGCA GCGCAGGCCC GGAGCAGCTT GTTGAAGTGG TTAGAGACAT GCTGCCACGC
CTCCAGACCC CTCTGCTGGT CGAGCCCAAT GCCGGATTGC CGGAGTTGAT CGACGGCGAG
ACAGTGTTCA ATCTCGGCCC TGAGGCCTTT GCCCAACAGA TGCGGCAATT TGTCGAACTT
GGTGTTGGGT GTGTCGGCGG CTGTTGCGGT ACCAGCCCCG ATCATATCCG GGCCCTGGGG
CGGGAATGCC CGGAGAAAAG TGCTGCCGCG AATTCTGTTT TTTCGCCTTG TCCCCCGGTG
GTGGTGACCT CCCGCTTCGG CTCGGTGACT TTGGGGCCCA AAAGCCCGCT GGCACTGATC
GGAGAACGGA TCAATCCCAC CGGCAAGAAA GACCTGACGG CCGAATTGCA AGCCGGAGAA
CTCCAGCGAG CCTGCGCTTT GGCCGCTGAA CAGGTCCAGG CCGGGGCCAC TGTCCTGGAC
ATCAATGTCG GGGCCCCATT GGTTGAAGAG AGTCAACTTA TTCCAGAGCT CGTCCTGGAA
CTCTCCCGGC GTCAGCAAGT CCCTTTGTGT CTTGATTCTG CGGACCCAGA CGCCATTGAA
TTGGGGTTGC AGGCTGCACC GGGCAGCCCT CTGGTCAATT CCATCAGTGG CGAGGAAGGG
AAAATGGAGC GATTGGCGCC TCTTTGTGTC CGATACGGAG CTCCATTTAT TCTTCTCCCT
CTGGAAGGGG GCGCCCTGCC GGTCAGCGCA GAAAGTCGGC TGTCCATTAT CCAGCGTTTG
ATCGACAAGG CATTGGCGCT CGGGGTACCA AAGCGTCTCA TCGTCGTCGA CGCTCTAGCA
TTGACCGTTT CCTCAAAACC CGAAGCCGCC CGGGCCTGCC TGGAAACCAT CCGGGCCTGC
CAGGAGCGGT GGGCCGTGCC TTCCGTGCTT GGATTATCCA ATATTTCTTT TGGGCTGCCA
GCTCGAGAAC TTCTGAACAG CACGTTTCTG ACCATGGCTA CGGGAGCCGG GTTGTCCGGC
TGTATCGCCA ACCCCGGATC CGTTCGGCTT CAGGAAGCCC TGGCCGCTTC AGAAGTGCTT
CTGGGACGTG ATCCTCAGGC CCAGCATTTC ATCCAGGGGT ATGCCGAATG GACGCCCGGG
ACTGGGGCGG TGCCAGCCAG GGCCACCGCC TCGGGAGGGG GAGAGGAGGA GCGTACGGTG
TTGCAGCGCG CGGTGATCAA GGGCGAAACC GAGGTGGTCA CCCGGGAAGT CCAAGAAGCG
CTGCGCCAGG GAAGCCAGCC CTTTGAACTG GTGAATAACG AGCTTATCCC GGGGATCATG
GCCGTTGGTG AGAAATATGA GAAAAAAGAA TATTTTCTCC CGCAGCTTCT GCTTTCGGCT
GAAGCGATGC AGGCCGGCTT CGAACTTTTG CGTCCGCTCT TGGAAGCCGC CAAGGACCAG
GAGAAACCGA AAAAGATCAT CCTGGCCACA GTTGAAGGCG ATATTCATGA TATCGGAAAG
AATATCGTGG CCTTGTTGTT GCGCAATCAC GGATTCGAGG TCGTTGATTT GGGCAAAGAC
GTTCCCGCGG AAACCATCGT TCAGGCAGCG GAGGAGCATG AGGCAGAACT CATCGGTCTT
TCAGCATTGA TGACCACGAC GATGGTCAAA ATGGAGCAGA CGCTCGAACT GGTTCGCAAG
CGGGGGCTCT CAACCCAGGT TCTGGTTGGC GGGGCGGTCG TCACTCCCGA ATACGCCAGA
GTCATCGGAG CTCACGGGTA CGCCGCGGAT GCTGTCGGAG CGGTAAAAAA AGCCAAGGAA
CTGGTGGCGG AGTAA
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| Protein sequence | MSAFRKALQG NKVLIFDGAM GTLLQSRGLV PGQSPEQFGR SNPEAVAAAH RDYLEAGADV
ITTNTFGGTA YKLGTDIDVR AFNAQMAAVA RKEAGDKHFV AGSVGPTGHM VRPLGNVGFT
DLVQAFRTQI RGLVEGGVDC ILAETHFDLA EAKAVVVAAR QECDLPVGVS MTFEGGCSLT
GTPPHCFVDT MQNLDVDLLA TNCSAGPEQL VEVVRDMLPR LQTPLLVEPN AGLPELIDGE
TVFNLGPEAF AQQMRQFVEL GVGCVGGCCG TSPDHIRALG RECPEKSAAA NSVFSPCPPV
VVTSRFGSVT LGPKSPLALI GERINPTGKK DLTAELQAGE LQRACALAAE QVQAGATVLD
INVGAPLVEE SQLIPELVLE LSRRQQVPLC LDSADPDAIE LGLQAAPGSP LVNSISGEEG
KMERLAPLCV RYGAPFILLP LEGGALPVSA ESRLSIIQRL IDKALALGVP KRLIVVDALA
LTVSSKPEAA RACLETIRAC QERWAVPSVL GLSNISFGLP ARELLNSTFL TMATGAGLSG
CIANPGSVRL QEALAASEVL LGRDPQAQHF IQGYAEWTPG TGAVPARATA SGGGEEERTV
LQRAVIKGET EVVTREVQEA LRQGSQPFEL VNNELIPGIM AVGEKYEKKE YFLPQLLLSA
EAMQAGFELL RPLLEAAKDQ EKPKKIILAT VEGDIHDIGK NIVALLLRNH GFEVVDLGKD
VPAETIVQAA EEHEAELIGL SALMTTTMVK MEQTLELVRK RGLSTQVLVG GAVVTPEYAR
VIGAHGYAAD AVGAVKKAKE LVAE
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