| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0846 |
|---|
| Symbol | secD |
|---|
| ID | 8418665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1003209 |
|---|
| End bp | 1004810 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645037415 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_003197715 |
|---|
| Protein GI | 258404973 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000476642 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.132271 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCT TGCGATGGAG AATAGTGCTG GCAGTCATCG TCTTGGGGCT TGGCTTGGCA
TATGCCTTGC CCTCAGTGCT GCCGTCGGGT TCCGGGATAC AGAAAATGCT CCCGGACAAA
GAGGTCAACC TGGGGCTCGA CCTCAAAGGG GGCATGCACC TGACCCTGGG GGTTGATCTG
GAGACCGCCA TCCAGAACGC CTTGTCGCAG ACCGGCCAGG ATATCCGGGC CGAGGCGCGG
GAGGAGTCCA TTTTGGTCCT GCGACCGGAA GTGGACAAAG CGGGCAATCT CCAGTTTTGG
CTGGCCAAAC AGGAACAATC CGAAACGCTC CAGGCGCTTT TGGAGGACAG GTTTCCCAAT
GTGAGCATCC AAGGGGTGGA AACCCTCGAC AACGGTCGGC AGAAGTACAC TGTCGGCTAC
CGCCCCAAAT ACCGCGAACA TCTTGAGGAA ATGACTCTGG ATCAAGCCTT GAAGACGATC
CGCAACCGAG TGGACCAGTT TGGGGTGGCC GAACCTGATA TACGCAAGCA ACAAGGCAAC
CGGATCCAGG TCCAATTGCC CGGACTTGAG GATCCTGAGC GGGCCATCAA GATTATCGGC
CAGACCGCCC ACCTCGAATT CAAGCTGGTC GACGAGGATG CAGACGCCCA AAAGGCAGAA
AGGGGCATTG TCCCTCCCGG AAGCGAGCTT GCCTATCTGC AACGCAAGAT GCCGGACGGC
AGCTACAAGA AGCAGCCGAT TGTCCTGGAA AAGAACGCTC TGCTCACAGG TGAATACATA
ACCGACGCCT CGACACAATT TGACACCAGC GGTTTCAATC AACCGTATGT CGCCTTGAGC
TTCAATCAAC GGGGGTCGAG GCTGTTTGAG CGCATAACCG CGGAACATGT CGGCGATAGA
TTGGCCATTG TCCTGGACGG CAAGGTCTAC TCCGCGCCCA GGATCCAGGA GCGCATCAGC
GGAGGACGGG CCAGCATCAC CGGCGGATTT ACCACCGAGG AAGCGCATGA CTTGGCTCTT
GTCCTGCGCG CTGGATCGTT GCCCGCGCCG GTGGATGTCC TTCAGGAGCG CAGTGTCGGC
CCCTCCCTGG GGCAGCAGTC GATTGACCAG GGGATCATGT CCATCGTCGT CGGTGGCGCC
TTGGTTCTGT TGTTCATGGT CATCTATTAC GGGATCGGAG GCATTGTGGC CGATACCGTC
CTGGCCTTGA ATATTCTGCT CATCCTGGCC GGTTTGGCCG GGTTTGGCGC CACCCTGACC
CTGCCGGGCA TCGCGGGGAT CATCCTGACC ATCGGTATGG CCGTCGATGC CAATGTCCTT
ATTTTCGAGC GCATCCGTGA AGAACTGCGG CGAGGACTCG GTCCCCGGAA AGCGGTTGAT
GAAGGATTTG CACGAGCCAC ATTGACCATT CTCGATGCCA ATGTGACGAC GATCATCGCG
GCGATCATTC TTTATCAATT CGGCACCGGC CCCATCCGCG GCTTTGCTGT GACCTTGTCG
CTCGGTATTG TGGCTTCCAT GTTTACAGCC ATTTTTGTGG CCCGGATCAT GTTCGACCTG
TGGTTGAGCA GAAAACAGCC AGCATCGAGC CTGAAGCTTT AG
|
|---|
| Protein sequence | MSSLRWRIVL AVIVLGLGLA YALPSVLPSG SGIQKMLPDK EVNLGLDLKG GMHLTLGVDL
ETAIQNALSQ TGQDIRAEAR EESILVLRPE VDKAGNLQFW LAKQEQSETL QALLEDRFPN
VSIQGVETLD NGRQKYTVGY RPKYREHLEE MTLDQALKTI RNRVDQFGVA EPDIRKQQGN
RIQVQLPGLE DPERAIKIIG QTAHLEFKLV DEDADAQKAE RGIVPPGSEL AYLQRKMPDG
SYKKQPIVLE KNALLTGEYI TDASTQFDTS GFNQPYVALS FNQRGSRLFE RITAEHVGDR
LAIVLDGKVY SAPRIQERIS GGRASITGGF TTEEAHDLAL VLRAGSLPAP VDVLQERSVG
PSLGQQSIDQ GIMSIVVGGA LVLLFMVIYY GIGGIVADTV LALNILLILA GLAGFGATLT
LPGIAGIILT IGMAVDANVL IFERIREELR RGLGPRKAVD EGFARATLTI LDANVTTIIA
AIILYQFGTG PIRGFAVTLS LGIVASMFTA IFVARIMFDL WLSRKQPASS LKL
|
|---|
| |