Gene Dret_0744 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0744 
Symbol 
ID8418558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp877754 
End bp879088 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content59% 
IMG OID645037309 
ProductUDP-N-acetylmuramoylalanine/D-glutamate ligase 
Protein accessionYP_003197614 
Protein GI258404872 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCACGGTT TGCTGCATCC CGGACAACTT AAAGGGCATT GCGCCGCAGT GCTCGGAGCC 
GGTCGGTCCG GCTTGGGAGC CGCCCGGCTT TTGGATTTTC TCGGGGCGGA TATCCGTTTG
CTGGAAAAAT CCCCTGAGCG TCTTTCGTCC GACGTGGAGC AGGAGGCCCA AACCAAGGGA
TGGACGGTGC GGACCGGGGA GCATGCGGCG GCGGATTTTG ATGGCGTGCA GATGGTGGTC
CCGAGCCCAG GTGTGCCGGT ACACCGTCTG GTCCATTTAT TTCCTCAGAC GGTGCAGATC
ATCTCCGAAC TCGAACTCGC CTCCTGGTTC GTCAATGAAC CGATTGTCGC AGTCACCGGT
TCGGCGGGGA AGACCACAAC GACGACCTTG ATTGCCCATA TTCTGGAAAC GGCCGGGCGC
CGGGTCTTCA GTGGTGGAAA TCTGGGCACG CCCCTCTCGG AATATGTCCT CGCTCAGGAC
CAGGCCGACG TGCTGGTTTT GGAAGTCAGC AGTTTTCAGC TTGTCCATGC CAGCAGTTTC
CACCCTAAGG TGGCTGTCTT GCTCAATGTG GCCCCCAATC ATCTCGATTA CCACGAGGAG
ATGGAAGCCT ATGTCCTGGC CAAGCTCAAA CTCTTCGCCA AACAGCAGCC TGGAGATTTG
GCCATCGCGC CGTATGCGTT GAAAGAGGAT CTTGAAAGCC GCCACTTCTC AGCAGCCGAC
CGGGTCTATT TTGTTCCCAA TGATCGTTTT TCTTGTCCCC AACTGCCGGG GGAACACAAT
CAGGCCAATA TTGAGGCCGC CTATCTCGCC TGCCGTTATC TTGGTGTTGA CGAACAGGCT
GTGGCTGAGG CGCTGGCCAG CTATCAGCCC CAGGCGCATC GCCTGCAGAT CGTCGGGACC
TGGAACGGGG TGAAAGTGGT GGACGATTCC AAAGCCACGA CCATCGAGTC CCTCCAGGCC
GCTTTACGCA GTTTCGAGGA ACCGATCGTT CTGTTGGCTG GCGGCCAGTT CAAGGGGGGC
GATCCAAGCC TGGTGGCGGA TTTGATCCGT ACCAGGGTCA AAGAAGTGGT CCTTTTTGGC
GACAATCGCG ACGTTTTTGA ATCGGCCTGG CAGGGGCTGG CACCGATGCG TTGGTTCCCG
ACCCTGGAAG ATGCCGTGGA TCATGGAGCC ACAACAACCC AATCCGGGGA TGTGCTTCTC
TTGTCCCCGG CCACGGCCAG TTTCGATCTG TTTACCGATT ACAAGCACCG CGGGGCGGTC
TTCCAGGAAG CCGCCCGGCG GTGCCTGACA ACAGCAGCAG GTGGACCCTC GGATGGCGCA
CCAACCGCGC AATAG
 
Protein sequence
MHGLLHPGQL KGHCAAVLGA GRSGLGAARL LDFLGADIRL LEKSPERLSS DVEQEAQTKG 
WTVRTGEHAA ADFDGVQMVV PSPGVPVHRL VHLFPQTVQI ISELELASWF VNEPIVAVTG
SAGKTTTTTL IAHILETAGR RVFSGGNLGT PLSEYVLAQD QADVLVLEVS SFQLVHASSF
HPKVAVLLNV APNHLDYHEE MEAYVLAKLK LFAKQQPGDL AIAPYALKED LESRHFSAAD
RVYFVPNDRF SCPQLPGEHN QANIEAAYLA CRYLGVDEQA VAEALASYQP QAHRLQIVGT
WNGVKVVDDS KATTIESLQA ALRSFEEPIV LLAGGQFKGG DPSLVADLIR TRVKEVVLFG
DNRDVFESAW QGLAPMRWFP TLEDAVDHGA TTTQSGDVLL LSPATASFDL FTDYKHRGAV
FQEAARRCLT TAAGGPSDGA PTAQ