| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0565 |
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| Symbol | |
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| ID | 8418377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 685628 |
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| End bp | 686971 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645037133 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_003197440 |
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| Protein GI | 258404698 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGAA AGCGAAGAAA AGCGGTTGCA CCGAAAACGA GCGAGCTCGA TTTTCTCCAT
GTCGGTGATG CGGCGATCCA CAGAAAAGGA TACCGCTCGG CGTACGTGCT TTCTGCGGCC
ATAATCCTTT GTATTTGCGC CCTGATTGCC TGGGCCCATT TCGCCATCCT TGATGAAGTC
ACCCGCGGCG TCGGGAAGGT GGTCTCGTCG AGACGAACAC AGGTTATCCA GAATCTTGAG
GGGGGGATTA TTGAAGATAT CCTGGTGGAT GAAAATCAGC TTGTCGATGA GGGCGATGTC
CTCGTGCGAC TGAGCAATGT GACGGCCGTC AGCCAAGTGC AGGACGCCTA CCACCAATCC
CTGCAACACC GCGCCGCAAT CGCTCGTCTG CAAGCAGAGG TTCAGGGAAA AGAGCCTGAA
TTCTCAGAAG AGTTGCTTCG GGAAGCCCCG GATATTGTCG AGGACCAGCG CGCCATCTAT
GAAGCGCGAA AACGGCAGTT AGAGCAGGAA GTTCGCGTTT TGCGCTCCCA ATATACGCAA
AAGCTCCAAG AAGTTGCCGA GATGAAAAGC CGTAAAAAGC AAATGGAGGC GAATCTTGCC
GTGGCCCTGG AGCAGCGCGA TATCGCAGAA CCGCTGGTTA AAAAACAGAT TTACCCCCGG
GTAGAATTCC TCCAGCTTGA ACGGGAGATT ATCAGCCTGC GCGGCAACCT GGAGACATTG
GAACTTTCCA TTCCCCGGGC CAATAATGCG GCAATCGAAG TCCGCGAACG TCTTGAACAG
CGTCGAGCCG AATTTGAGGC CGCGGCGCTG GAGGAGATGA ACCGGCAGCG GGTGCAGTTC
AATTCCCTTC AGGAACTGCT GACTGCAGGC GAGGATCGTG TCCAACGCAC AGATGTCCGT
TCCCCCGTGC GCGGTACTAT TAAGCAACTT CTCGTGAACA CGATCGGAGG CGTGATCCAA
CCCGGCGAAC CCATCATGGA AATCGTTCCT GTGGATGACA CCTTATTGGT CGAAGCATCG
ATCCGCCCGG CTGATATCGC CTTTATCCAT CCAGGGCAAA AGGCGATGAT CAAGGTTTCG
GCGTATGACT TTTCCATCTA CGGCGGTCTT GAAGGTGTGG TAGAGCAAAT AAGCGCTGAC
ACCCTGTCCA ATGAAGAAGG GGAGAGTTTT TATAAGGTCA AATTGCGGAC CAGAACCAAT
GCGTTGACGT ACAGGGGCAA CACTTTGCCC ATCATTCCGG GTATGACGGC CACAGTAGAT
GTTTTAACCG GGAAAAAGTC CGTTCTCGAC TATTTGCTCA AGCCGATCTT CAAGGCCAAA
CAAAACGCCT TGCGAGAGCG GTGA
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| Protein sequence | MTRKRRKAVA PKTSELDFLH VGDAAIHRKG YRSAYVLSAA IILCICALIA WAHFAILDEV
TRGVGKVVSS RRTQVIQNLE GGIIEDILVD ENQLVDEGDV LVRLSNVTAV SQVQDAYHQS
LQHRAAIARL QAEVQGKEPE FSEELLREAP DIVEDQRAIY EARKRQLEQE VRVLRSQYTQ
KLQEVAEMKS RKKQMEANLA VALEQRDIAE PLVKKQIYPR VEFLQLEREI ISLRGNLETL
ELSIPRANNA AIEVRERLEQ RRAEFEAAAL EEMNRQRVQF NSLQELLTAG EDRVQRTDVR
SPVRGTIKQL LVNTIGGVIQ PGEPIMEIVP VDDTLLVEAS IRPADIAFIH PGQKAMIKVS
AYDFSIYGGL EGVVEQISAD TLSNEEGESF YKVKLRTRTN ALTYRGNTLP IIPGMTATVD
VLTGKKSVLD YLLKPIFKAK QNALRER
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