| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0392 |
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| Symbol | |
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| ID | 8418197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 479407 |
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| End bp | 481080 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645036956 |
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| Product | Heparinase II/III family protein |
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| Protein accession | YP_003197270 |
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| Protein GI | 258404528 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5360] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.276932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.686057 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCGAC GTTTTCCTGC CATGGATATT CAAACATATT TCCACACCCT TCGGCATCTC
AAAGCCGGCC AAATCTATGC CCGTTTGATC CGTAAGCTCC GCCGTCCCCA AATCGATTCC
CGTCCGGCGC CGGACATTCG TACCGGGGGG CGGCAAGATT GGGTGCAGCC GGTCAAGCGG
CCCCAGTCCA TGCTGGGGCC GGCGACCTTT TGCTTTTTGA ACCAGACCCA CACCTTGCAC
TGGCCGCAGG GTTGGAACGA TGCGGTCGCG GACAAATTGT GGCTCTACAA CCTGCACTAT
TTTGATGACC TCCATGCCCA GGGCGCAGAA GAGCGCACCG CATGGCACCA CCGGCTGCTT
TTGCGCTGGG TGGACGAGAA CCCGCCTGGC AAGGGCAACG GCTGGGAGCC GTATCCCACC
TCGCTTCGAG TTGTGAACTG GGTCAAGTGG GCCTTGGCCG GGAATACGTT GCCGGAAGCC
GCGGTGCACA GCCTGGCGGT GCAGGTCCGC TGGTTGGGCA AGCATCTGGA ATACCATCTT
CTGGGCAACC ACTTGTTTGC CAACGCCAAG GCCCTGGTTT TTGCCGGGGC TTTTTTTGAG
GGCCAGGAAG CCCGCCAATG GATGGACAAG GGCCTGGCCA TTTTGGCCCG GGAAATCCCG
GAGCAGATTC TGCCAGACGG GGGGCATTTT GAGCGCTCGC CCATGTACCA CGCCATCGCT
GTGGAAGATA TGGCGGATCT GGTCAATATC TGCCGGGCCT ATCCGCACAG CCTGCCGCAG
CAGGGCCACG AGCTTGTCCG CTCTTGGCCG GATACCGTGC AGCGGATGCT GGAGTGGTTG
CAGGCCATGT GCCATCCGGA CGGCAATATC GTGCTGTTGA ACGATGCCGC CTTGAATATT
GCCCCTGGGC CAAAGCAGCT GGCCCAATAC TGCCAGCGGC TGGGGATTAG GCCGGCCAGC
CGGGAGAGCG GGGAGCGGTT GCGGGTGACG CAGTTGCCGG ACACCGGCTA TATCCGGGTT
GACGCCGGGG AGGCGGTTGC CTTTTTAGAC ACCGCCCCCA TTGGGCCGGA TTATCTGCCG
GGGCATGCGC ATGCGGACAC ATTGACGTTT GCCCTGTCTG TGTGGGGGCA GCGGCTGATC
GTGGACTCCG GGGCGTCATG CTACGGGCTG GGTCCGGAGC GGTTGCGGCA GCGCTCGACC
GCCGCGCACA ACACCGTGGT CGTGGACGGG AAGGATTCCT CCGAGGTCTG GTCGGGCTTT
CGGGTCGCTC GGCGGGCGTA CCCCAAGGGA TTGACCGTGC GGCAAGACCA CGAGGTGGTC
ACGGTGCAGT GCAGCCATGA CGGGTATACG CGGCTGCCGG GGAGCCCTGT GCATACCAGG
CGCTGGGAGT TTACTCCGGG CAAGCTGGGC ATGCAGGACA GTATTTCCGA TGCACAATCC
GGGGCGCAGG CCCGCTTGCA TCTGCATCCT GCTTGGCACT GCCGACGTGT GGACGGGCAT
ACGGCTGACC TGCATCTGGC CCCGGGAAAA CGGGTGCGGG TGGCCATTCG GGGCGGGCAG
ATGACAATGG AAGAGAGCAC ATGGCATCCA GAATTTGGCG CGTCGTTGCC GAACATCTGT
CTTGTGCTGG ATTTTTACGG GCAATTGTAT ACGGAGATTG GCTGGGACGT ATGA
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| Protein sequence | MGRRFPAMDI QTYFHTLRHL KAGQIYARLI RKLRRPQIDS RPAPDIRTGG RQDWVQPVKR
PQSMLGPATF CFLNQTHTLH WPQGWNDAVA DKLWLYNLHY FDDLHAQGAE ERTAWHHRLL
LRWVDENPPG KGNGWEPYPT SLRVVNWVKW ALAGNTLPEA AVHSLAVQVR WLGKHLEYHL
LGNHLFANAK ALVFAGAFFE GQEARQWMDK GLAILAREIP EQILPDGGHF ERSPMYHAIA
VEDMADLVNI CRAYPHSLPQ QGHELVRSWP DTVQRMLEWL QAMCHPDGNI VLLNDAALNI
APGPKQLAQY CQRLGIRPAS RESGERLRVT QLPDTGYIRV DAGEAVAFLD TAPIGPDYLP
GHAHADTLTF ALSVWGQRLI VDSGASCYGL GPERLRQRST AAHNTVVVDG KDSSEVWSGF
RVARRAYPKG LTVRQDHEVV TVQCSHDGYT RLPGSPVHTR RWEFTPGKLG MQDSISDAQS
GAQARLHLHP AWHCRRVDGH TADLHLAPGK RVRVAIRGGQ MTMEESTWHP EFGASLPNIC
LVLDFYGQLY TEIGWDV
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