Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0315 |
Symbol | |
ID | 8418119 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 389990 |
End bp | 391936 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 645036880 |
Product | methionyl-tRNA synthetase |
Protein accession | YP_003197195 |
Protein GI | 258404453 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0143] Methionyl-tRNA synthetase |
TIGRFAM ID | [TIGR00398] methionyl-tRNA synthetase [TIGR00399] methionyl-tRNA synthetase C-terminal region/beta chain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCACGTT ATTATATTAC CACGCCAATT TATTATGTAA ACGCCAATCC CCATCTGGGA CACGCGTATA CGACCATTGT CGCCGATTGC GTGAACCGTT TTCACCGGCT TTTGGGGCAG GAAACCTTTT TTCTGACCGG GACCGACGAG CACGGCGACA AGATTGTCCA GGCAGCCGAA GACGCCGGAC AGTCGCCTCA GGAATACGTC GATCGCATCA GCAGCAAGTT CCAGCAGCAA TTGCCGGATC TCAATATCTC CAATGACCGT TTCATTCGGA CCACAGACAG CGACCACAAA GACTGCGTGC AGCGTTTTCT GCAGCAGGTG TACGACAACG GCGATATCTA TTTCGGAGAA TACGGCGGGT ATTATTGCTT TGGGTGTGAG CGGTTCTATA CCGAAAAAGA ACTCGTCGAC GGCCTGTGCC CCGACCATCT CAAGCCCCCG AAGTACATCG AGGAAAAGAA TTATTTCTTC CGGATGCAAA AGTACCAGGA CTGGCTGGTC CAGTATATCC AGGACAATCC TGGGTTTATC CAGCCGGAGC GTTACCGCAA CGAGGTGTTG GGTATGCTTC GCGAGCCGCT CGACGATCTG TGCATTTCCC GGCCGAAAAC ACGGTTGACC TGGGGGATCG AACTCCCTTT TGACGACCGG TATGTGACCT ATGTCTGGTT CGACGCGTTG ATCAATTATA TCACAGCCCT GGGGTGGCCT GACGGCGACA GGTACCGGCA ATTCTGGCCG GTTGCCCACC ATCTGGTGGC CAAGGATATT CTCAAGCCCC ACGCGATCTT CTGGCCGACA ATGCTCAAGG CAGCCGGCCT TGAACCGTAT CAGGGACTGC ATGTCCACGG CTATTGGACG GTCAACGAGA CCAAGATGTC CAAGAGTCTC GGCAATGTAG TCGCCCCCCT GACCATGAGG GACACCTACG GCCTCGACGG CTTCCGTTAT TTTCTGCTCC GGGAGATGCA GTTCGGTCTG GACGCCTCGT TTTCCGAAGA AGGGCTCGTG GCCCGCTTCA ACGCTGATTT GGCCAATGAT CTCGGCAATC TGTTCAACCG CGCCCTGGCC ATGACCCATA AATACTTTGG CGGCCGGGTC CCGTCTCCGG GGGCTTTGGA GGATGAAGAC CACGCCATCC GCCAACTCGG TGTGCGCGCT GTACAGGGGT ATGTCGACAG CGGCAAATCC TTTGCCTTTG CCGCAGGCCT GCGCCAGTTG TGGGACCTTG TCCGGGGACT GAATAAATAT ATCGACGCCA CTGCGCCGTG GACGTTGTAC AAGGCCGGTG AGACCGAGCG CTTGGGCACG GTCATGTACA CGGTTCTTGA AGGAATGCGT CAGGTGGCTC TGGCGCTCTG GCCAGTCATG CCGGACGCCA GCGGGAGTAT GCTCCAGCAA TTGGGCCAGC CGACCGATCC GAGCGGACGG AATATGGAGG AGGATGTCCG GCAGTGGGAT ATTTTGGCGG TGGGCACCGA AGTGGCGAAA AAATCGAATC TGTTCCCCAG ACAGGAAGCG GTCGCCAAGA AAGAGGAGAC CCCGTCTGAA GGCCAGAGCG GAAAGAATAA GCCCAAAAAA CAGGCATCGG CCCAAAAGGA GCCTGAAACC GGCGTGGCGA GTTTTGAGGA TTTTCAGAAG GTCGAGTTGC TGGTGGGAAC AATCCTGGCA GCAGAACCGG TGGCCAAGGC GGATAAGCTC TTGCAATTGC AAGTCGATGT CGGGGAAGAA GAGCCGCGAC AGGTGGTTTC CGGCATCGCC GAGCATTTTG CTCCAGAGGC GGTGGTCGGG CAGCAGGTCG TTGTGGTGGC CAATCTGAAA CCGCGCAAGG TCTTCGGGAT CCTCTCCCAG GGCATGATCC TGGCGGTCCA CGCAGAAAAG GGATTGCAGC TGGTGCAGCC CGGGGGAGCG GTTCCAGCCG GCAGCCGCGT CAGTTAG
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Protein sequence | MSRYYITTPI YYVNANPHLG HAYTTIVADC VNRFHRLLGQ ETFFLTGTDE HGDKIVQAAE DAGQSPQEYV DRISSKFQQQ LPDLNISNDR FIRTTDSDHK DCVQRFLQQV YDNGDIYFGE YGGYYCFGCE RFYTEKELVD GLCPDHLKPP KYIEEKNYFF RMQKYQDWLV QYIQDNPGFI QPERYRNEVL GMLREPLDDL CISRPKTRLT WGIELPFDDR YVTYVWFDAL INYITALGWP DGDRYRQFWP VAHHLVAKDI LKPHAIFWPT MLKAAGLEPY QGLHVHGYWT VNETKMSKSL GNVVAPLTMR DTYGLDGFRY FLLREMQFGL DASFSEEGLV ARFNADLAND LGNLFNRALA MTHKYFGGRV PSPGALEDED HAIRQLGVRA VQGYVDSGKS FAFAAGLRQL WDLVRGLNKY IDATAPWTLY KAGETERLGT VMYTVLEGMR QVALALWPVM PDASGSMLQQ LGQPTDPSGR NMEEDVRQWD ILAVGTEVAK KSNLFPRQEA VAKKEETPSE GQSGKNKPKK QASAQKEPET GVASFEDFQK VELLVGTILA AEPVAKADKL LQLQVDVGEE EPRQVVSGIA EHFAPEAVVG QQVVVVANLK PRKVFGILSQ GMILAVHAEK GLQLVQPGGA VPAGSRVS
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