| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0243 |
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| Symbol | |
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| ID | 8418047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 304057 |
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| End bp | 304683 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 645036808 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003197123 |
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| Protein GI | 258404381 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR00756] pentatricopeptide repeat domain (PPR motif) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.127552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAAA GTCAATTTGA TATAGAGGCC TATATGAAGG ACCAGCGGGA GCGTATTGCT
GAAAACCCCA AAGACAGCGT GGCGCATTAC AATTTAGCCA CCGTGCTCAT CGGCCGGGGG
CAGCTCCAGG AGGCCGAAGA CCACCTTAAA CAGGCCATCC AGGCCGACCC GGAGCTTGCC
GAAGCCTATG TGCAATTGGG CGGGCTGGCT ATGCACCGCA ACGATCTGGC CGCGTGCATG
AGCTTTAACC AGCGGGCCAC GGAAATCCGG CCCCGCTTCG CCGTGCCCCA GGGCAACCTC
GGCTTTGTCC ATCTGCAGCA GGGCAATGTC GATCAGGCTG TCAAACATCT CAAACGGGCG
ATCTCCCTGG ATCCCCAATT TGTCCAGGCC ATTGCAACAC TGGGTAACGC CTATCTCATG
GATGGCGATG TGGATGGCTG CATTGAGGAA AACCAGAAAG CGATCGATCT TCAGCCTACG
TTTGGTCCGG CATACAACAA TATGATGCTG GCTTATATGG AAAAAGGCGA TTTTGCAAAG
GCGTCTGCCT ATTGCAAGCA AGCGGAAGAA AACGGTTTTG AGGTTGCCCA GAAAGTCAAG
GACGATCTGG CGGAACACAC CGCCTAG
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| Protein sequence | MSESQFDIEA YMKDQRERIA ENPKDSVAHY NLATVLIGRG QLQEAEDHLK QAIQADPELA
EAYVQLGGLA MHRNDLAACM SFNQRATEIR PRFAVPQGNL GFVHLQQGNV DQAVKHLKRA
ISLDPQFVQA IATLGNAYLM DGDVDGCIEE NQKAIDLQPT FGPAYNNMML AYMEKGDFAK
ASAYCKQAEE NGFEVAQKVK DDLAEHTA
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