| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0186 |
|---|
| Symbol | |
|---|
| ID | 8417990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 236698 |
|---|
| End bp | 239130 |
|---|
| Gene Length | 2433 bp |
|---|
| Protein Length | 810 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645036751 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003197066 |
|---|
| Protein GI | 258404324 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTTC ACACCAAACT CCTCTTGGCC GTTTTGCCCC TGGTGCTTCC TGTCCTTGTC
TTCGGACTCT GGGCCGAGGG GCTTTTCGAC CATTTGGCCA GCGATACGAC GCAACTTGTC
TCCGGTTCGG AAGTTTTAGC CGACAAGGCT GAACGAGTGC ACACGCTGGC CCGATTGATC
GAGCGTCAAG CCGAGTCCGA TTACCGTCTT GTGGCTCGGG AGGCGGCCCG GAGTCTTCAG
AATTACCACC AATTTCTGAC TCAGGTGCAG CAACTCCTGG GCAGCAGTAC AACGCTGACC
CTGTACATGC ATTCGCATCC CTCCGGGCGG GAATATCTGG CTATGCAGCT GTATCCCGAA
CTGGAGCAGG CGCTCAAGAA TTTCCACCTT TCTGCGATCC GCCTTGTGGA CGACAATGGC
GTAAGCCTGC TCCATCAAGG GGTGCCTCCT TTGCAAAAAG CCGGGAGACA AAAGCGGAAG
CCACCGTGGT GGAGTCAGAT TCAACGGGAA TTGCACGCCG ATGCCCAGCA TATCTCTACT
CTCTACCAGG GCCAGAACAA GGGGGCGCCT GTCTACCGCC TGGCCGTGAT CATGCCCTTG
CGGTACTTGT GGAACCGCTA CAACCAGAAA GCGGGCAAGG TAAAAGGCTA TTTGAGTTTT
GAGGTCAGCC TTCCGGCTCT CATGGCGTAT CTGGGAAGCA AATCCGGACA CGGAGGGGAT
CTGGTCTGGA AGACCCCGGA CGGAACGGTG GTCGCGGGAC GTTCGGCAAA TGCGGCTGGC
CGATCCATGG CCGAGGTCGA GGCACAGCTG GGGCCCATGC GCCATTTCGA GGCCGAGGCC
GTGCCCGGCA AATTGGTGGT CGATTTTCTG CTCCCTGAAG CCTCGGTGTA CAGTCATGTC
CAGGCGGCGC GACAATTATC GACGTCACTG GATACCCGGG TCAAAGAGGT CGCCCATTTG
TCGAGTGCGG CCCAACACGA AAGCCTGCGA CTCCAAAGTG TGCTTTTTAT AACCCTGGCC
GTGACCCTGG TGCTTTCTCT TGTGCTCGCA CTTGTGATTT CCCGGGGAAT CGGACGCCCG
CTCTCCAGGT TGACTTCGGC TGCGGAGCGG ATTTCCAAAG GGAACCTCCA AGAAAATCCT
GGTGTTTATC CTCGCGATGA GATCGGCGAT CTGGCGGCGA GTTTCGAGCG CATGCGCAAG
GCCTTGCAGT CGCAGATCGC CACTTTGGAC AAGCAGGTCC GCGACAGAAC AGCGGCCTTG
TCCAAAGCCA AAGAAGAAGC CGAACGCGCC AACAGGGCTA AAAGCGACTT TTTGTCCGGA
CTGAGTCATG AAATCCGGAC CCCGATGAAC GCCTTGCTTG GCGCCTCAGA TCTTTTGGAA
AAAACTGAAC TCGATGCCCG GCAGCGGAAA TATCTGCGCA TGGGCAAGTC CTCGGGAAAG
ACCCTGCTGT CCCTGATTAC CAACCTGCTT GATGTGGCCC GTCTGGAGCG GGGGCGGCTC
CAGTTGGCCA GAGAGGTCTT TTCCCTTGAG CAGATGGTTC AGGAGGCGAT CGACGTGGTT
GAACTCGCCG CGCAGGAGAA AGGGCTTATC CTCAATAAGA AAATCGCCTT GGCGGTTCGG
GGCACGTATC TCGGCGATCC GGTGCGGCTG CGGCAAATCC TGGTCAATCT CCTCAATAAC
GCCATGAAAT TCACCCCTCA AGGACGAGTG TTGGTCGAAG TGACTCCCGC CGAGCAGACA
GGGGTCCTTT TCCGCGTTTC GGATACCGGA GAAGGTATTC CTCAGGAGTC CCTGGAGACT
ATTTTCGAAC CGTTCTCTCA ACTGGATTCC TCCTCAGGGC TGCCCAATTC GGGCAGCGGA
CTGGGGTTGG CGATCAGCCG CCAACTGCTT GAGGCCATGG GGGGGCGGAT CTGGGTCGAG
AGTCGTCTCG GTCGCGGTAG CGATTTCTTT TTTCTTGTGC CGCTTGAGCG GACAGATTCT
GCTGCGCCAG CCACCGTCGT CCCCCAGCCC GCGGAGGAGG TGCCGGATCT GACCGGACTC
CAGGTGCTTC TGGCAGAGGA CACTCCGAAT AACAGCATGT TGATCCGTTT TTTTCTTGAA
GGAACCGGCT GTCGCGTTTC TGCGGTGGAG AATGGGGCCG CAGCTCTGGA GGCACTCGAA
CGCGACAGGT ATGATGTCGT GTTGATGGAT ATCCAGATGC CGGTCATGGA CGGAATCACG
GCTACGCGCC GGATCAGGGC CCGGGAACAG GCCACAGGGG GCAACGCTAT CCCTGTGGTG
GCTATGACCG CGCACACGAA CGCCGAAGAG GTTTCAAAGC TTTACGCGGC CGGGTGCTCA
CAGTATTTAC CCAAACCAGT GTGCAGGGCC TATCTGCTCG AACTGCTTCA GCACATCCAC
ACCGGCACGT CCCAGATCCT GCATCAGCCT TGA
|
|---|
| Protein sequence | MRLHTKLLLA VLPLVLPVLV FGLWAEGLFD HLASDTTQLV SGSEVLADKA ERVHTLARLI
ERQAESDYRL VAREAARSLQ NYHQFLTQVQ QLLGSSTTLT LYMHSHPSGR EYLAMQLYPE
LEQALKNFHL SAIRLVDDNG VSLLHQGVPP LQKAGRQKRK PPWWSQIQRE LHADAQHIST
LYQGQNKGAP VYRLAVIMPL RYLWNRYNQK AGKVKGYLSF EVSLPALMAY LGSKSGHGGD
LVWKTPDGTV VAGRSANAAG RSMAEVEAQL GPMRHFEAEA VPGKLVVDFL LPEASVYSHV
QAARQLSTSL DTRVKEVAHL SSAAQHESLR LQSVLFITLA VTLVLSLVLA LVISRGIGRP
LSRLTSAAER ISKGNLQENP GVYPRDEIGD LAASFERMRK ALQSQIATLD KQVRDRTAAL
SKAKEEAERA NRAKSDFLSG LSHEIRTPMN ALLGASDLLE KTELDARQRK YLRMGKSSGK
TLLSLITNLL DVARLERGRL QLAREVFSLE QMVQEAIDVV ELAAQEKGLI LNKKIALAVR
GTYLGDPVRL RQILVNLLNN AMKFTPQGRV LVEVTPAEQT GVLFRVSDTG EGIPQESLET
IFEPFSQLDS SSGLPNSGSG LGLAISRQLL EAMGGRIWVE SRLGRGSDFF FLVPLERTDS
AAPATVVPQP AEEVPDLTGL QVLLAEDTPN NSMLIRFFLE GTGCRVSAVE NGAAALEALE
RDRYDVVLMD IQMPVMDGIT ATRRIRAREQ ATGGNAIPVV AMTAHTNAEE VSKLYAAGCS
QYLPKPVCRA YLLELLQHIH TGTSQILHQP
|
|---|
| |