Gene Dret_0184 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0184 
Symbol 
ID8417988 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp233826 
End bp235493 
Gene Length1668 bp 
Protein Length555 aa 
Translation table11 
GC content59% 
IMG OID645036749 
Productsignal transduction histidine kinase, nitrogen specific, NtrB 
Protein accessionYP_003197064 
Protein GI258404322 
COG category[T] Signal transduction mechanisms 
COG ID[COG3852] Signal transduction histidine kinase, nitrogen specific 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.37523 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACCC CGCCGACTGC GCCCGCATCA ACTGAGACAA CTGCATCAGC TCTGGGCAGC 
GACGACCGGC ACCGACTTGT TCTGGCCGCC GGCATCGTTC GTCTTGTCTG CCTCGGACTT
TTGCTCATTC CCCAGGCCCT TATCTGGGGC GGAGACACCA CGCCGGAGTT CATGTTCCGC
TACGGCGGCG AGGTGCTCTA TACGGTGGCG CTGGTTGCCG GTTTTCTGCT CAATATTGTG
TTTTTGCTCT CGTGGAAACG GTTCGTTTCC ACGAGTTGGC TGGTCGGCAC GCAATTGGGA
ACGGATATTG TTCTGGCCCT TGTCCTTGTC GTCTTAACCG GTGGCGTTTC GAGTCCGTTT
ACCTTCCTCT TCTGGGGCAT CGTTTTTTTT CATGGGCGTG TGCTCGGGCG ACGGCCTTCA
CTGGCCATAG GCGTCGGCGT GGCCGTGCTC ATGGGAGGAC TCGGTGCGGT TCAGGTCGTC
TGGCCGGAGA TTTGGCATCT GCAAGGGGCC CCGGGACAGT TGGGGTATTA TCTGTCGCTG
CAATGGGTCG GATTGGGGCT TGTCATTCTC CTGGTGCGTT CAAGCCGGAG CGAAACGGAG
AAACTTTTTG CCCGTTTGCG GCGGCAGGAA CAGGCCCTGG AAGAGGCCGA AGCCCTGAAA
GCCAAAGTTC TGGACTGGAT GGATAGCGGG CTCATGGTTC TCAATACGCG TGGCGAGGTC
ACCTCGGCCA ACAGACAGGC TCTGCTTATG GCCGGCGAAC ACCGATTGGA TAGCGTTCTT
GGCCGTCCCC TTCGCGATGT GTTTCCGGCC TTTGATCCTT ATTGGCAAAA ATGGCGCCAT
GACGGCCGCC GGGAACGTGA CGAAGTGCAG GACCCCGACC AGCGTGTTTA CGGGGTGCGG
ATGCTTTTAG CCCCGGATCA GCAGAGCACG CTGGTATTGT TCGCGGATAT CACCGAGATC
CGCCGCCTGG AGCAACGGGT CCGGGAGATG GAAAAAATGG CCACCATAGG CGAATTGGCT
GCTGGTTTGG CCCATGAAAT GAAAAATCCC TTGGCGGGAA TCAAAGCCGG ACTGCAACTC
GCCGAACAAG GGGATGTCCC GCCCGAGCAG TTGCACCGCC TCCATGGTGT TGTGCAGCGC
GATATCGGCC GACTTGATGT GTTGCTTCGG GATTTTTTGA ATTACGCGCG TCCCAATCCG
CCTCAGCCAG AAAGCGTGGA AATCGAGGAC GTCGTCGAGG ATGTTTTGAG CGTGTGCCGG
TATGAATTCC CTGGCGTTGA TTTTGCGGTT GCACGGGGGG TGGGCCGGGA GACGTGGTGG
GCGGATCGGC ACCATCTGCA CCAGGTCCTT TTGAATCTGG TGCGCAACGC AGCCGAGTCT
GTGGCCAGCC AGGGGCACGG CCTGGTCCGG GTCGAGCAGC TAGCTGATGA AGAGGGCAGG
GGGCTCGCCG TCGTGGATTC CGGCTCCGGG ATCCTGCCAG GGCAGGAGCG GAAAATTTTT
GACCCCTTTG TGACCACCAA AGAGCAGGGC TCCGGTCTGG GACTGTCTAT TGCCCAGCGG
TTGGCCCATC AGAATCGGTG CTGGATTGAA TTGCGCAATG CGGCCGGCGG TGGGGGAGAG
GCGCGTCTTG TGTATGAGTC AACGATCCCC GTATTTGGAG AGCGATGA
 
Protein sequence
MATPPTAPAS TETTASALGS DDRHRLVLAA GIVRLVCLGL LLIPQALIWG GDTTPEFMFR 
YGGEVLYTVA LVAGFLLNIV FLLSWKRFVS TSWLVGTQLG TDIVLALVLV VLTGGVSSPF
TFLFWGIVFF HGRVLGRRPS LAIGVGVAVL MGGLGAVQVV WPEIWHLQGA PGQLGYYLSL
QWVGLGLVIL LVRSSRSETE KLFARLRRQE QALEEAEALK AKVLDWMDSG LMVLNTRGEV
TSANRQALLM AGEHRLDSVL GRPLRDVFPA FDPYWQKWRH DGRRERDEVQ DPDQRVYGVR
MLLAPDQQST LVLFADITEI RRLEQRVREM EKMATIGELA AGLAHEMKNP LAGIKAGLQL
AEQGDVPPEQ LHRLHGVVQR DIGRLDVLLR DFLNYARPNP PQPESVEIED VVEDVLSVCR
YEFPGVDFAV ARGVGRETWW ADRHHLHQVL LNLVRNAAES VASQGHGLVR VEQLADEEGR
GLAVVDSGSG ILPGQERKIF DPFVTTKEQG SGLGLSIAQR LAHQNRCWIE LRNAAGGGGE
ARLVYESTIP VFGER