| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0168 |
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| Symbol | |
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| ID | 8417972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 211703 |
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| End bp | 213091 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645036733 |
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| Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_003197048 |
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| Protein GI | 258404306 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.59199 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTGC CGTTGCCCCA GTCACATCCG TTTTTCGAGG ATGTGGTGAA CACCATGCAG
GAAGGATTGT TGATCGTGGC CCCGGACGGA ACCATCCAGA TGGTCAACGA GGCTTTAACG
CATATCCTTG GCTATGAACG CGAAGAATTG CTCGGTCGTT CCTGTGCGGT CTTGCAGTGC
GATCAATGCC AGGCGGCCCG CGGCCAGGGG GGCGCGCACT GGTGCCGTCT GTTTGCCCAG
GGTCTGGAGC GCAAACGGAG GTGTACGGTC CGCCGGAAGG ACGGCCACCT GGTACCGGTT
CTGAAGAGTG CTTCGTTGCT CAGGCACAAC CAGGAGGTTG TTGGGGCGGT GGAGACCGTG
ACCGATATTT CCCTTCTCGA CCGCCACGAG ACGGCCATCA AAGACCTTGA GCGGGCCTTG
GACCGGGAAT TTTGCGGTAT GGTCGGCACG GCTCCGGCCA TGCGTCACCT GTTTTCCTTG
CTGGAAAAAG TGGCCCAAAG CGAAGCGCCG GTGATGGTGC GCGGCGAATC CGGAACCGGC
AAGGAACTGG CGGCCCGGGC CGTGCACGAG TGCAGTCCGC GGCGCGAGGG ACCGTTCATC
CAACTCAATT GCGCCGCTCT CAATGAAGCT CTTTTGGAAA GCGAGCTTTT CGGACACGTC
AAGGGCGCCT TTACCGGGGC CTATAGGGCT CGGCCGGGTC GGTTTGAAGT GGCGACGGGC
GGGACGCTTT TTCTGGATGA AGTGGGGGAT ATTCCGCTCT CGGTCCAGGC CAAGCTGCTC
CGGGTGCTGG AGACCAAGCA GATTGAACGG GTCGGTGACC ACCGGCCCAT TGAAGTGGAT
GTGCGGATCG TTTCGGCCAC AAACCGTGAT CTGGACCGTC TTGTTGCTGA GGGCGAGTTC
AGGGAGGATC TGTATTACCG GATCAACGCC CTGCCGGTGG CCATGCCAGC CTTGCGGGAG
CGTCCAGAGG ATATCCCCTG GCTGGCTAGC CATTTCCTTG GTCTGGTCCG GCAAAATAGC
GGCAAGGCGC TTACCGGACT GACCCCGGAG GCTCTGCGCT CTGTGGTCGC TTACCCTTGG
CCGGGCAATG TCCGAGAGCT CAAAAGCGCT CTGGAGTACG CCAGTGTTCT GGCCGAAACT
GGCCGTTTAA AGACGGAACA CCTCCCGCCT CATATTACGG CAGCAAACCC ATCAGCACAG
CCGGCTGCAA GCCATTCCGG GGAAGAAACG GCTGATGCGC AGCGCCAGGC GTTGATAGAG
GCCTTGCGGC AAAGCGGTGG CAACCAGAGC CGGGCTGCGC AATTGTTGGG GGTCTCCCGG
GTGACCGTTT ATAACCGGAT GCGCAAATAC GGTCTCACGG TGCAGACAGT GGTCGAAAGC
CGGCACTGA
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| Protein sequence | MTLPLPQSHP FFEDVVNTMQ EGLLIVAPDG TIQMVNEALT HILGYEREEL LGRSCAVLQC
DQCQAARGQG GAHWCRLFAQ GLERKRRCTV RRKDGHLVPV LKSASLLRHN QEVVGAVETV
TDISLLDRHE TAIKDLERAL DREFCGMVGT APAMRHLFSL LEKVAQSEAP VMVRGESGTG
KELAARAVHE CSPRREGPFI QLNCAALNEA LLESELFGHV KGAFTGAYRA RPGRFEVATG
GTLFLDEVGD IPLSVQAKLL RVLETKQIER VGDHRPIEVD VRIVSATNRD LDRLVAEGEF
REDLYYRINA LPVAMPALRE RPEDIPWLAS HFLGLVRQNS GKALTGLTPE ALRSVVAYPW
PGNVRELKSA LEYASVLAET GRLKTEHLPP HITAANPSAQ PAASHSGEET ADAQRQALIE
ALRQSGGNQS RAAQLLGVSR VTVYNRMRKY GLTVQTVVES RH
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