| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0128 |
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| Symbol | |
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| ID | 8417932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 167972 |
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| End bp | 168925 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 645036693 |
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| Product | Substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_003197008 |
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| Protein GI | 258404266 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0344817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.869462 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGGTT TTTCCAAGAA AGTTCTTGTT GCATTGATCG CTTTTGCCGT TCTCACCATG
AGCGCTTCAC AGGTCCTGGC GGCCAAAGAA GTGCGCTTCG CCAGCGTCAG CTGGACCGGC
GTGACCACCA AGACCGAACT GGCTGTGCGC ATCCTGCGCA GCCTGGGCTA CGAGGCCTCG
AACACCATGG TTTCCGTGCC CATTGCCTTC AAGGCCCTGG ACACCGGGGA GGCCGATATT
TTTCTCGGCA ACTGGATGCC CACCCAGGCC ACAATGGCCA ACAAATACTT CGACAAGGGC
ACCATCGAAC CGCTCGTGGC CAGTATGCCC GGAGCGAAAT ACACCCTGGC CGTGCCCACA
TACGCCTATG AAGGCGGCTT GCAGCACTTC AAAGACATCG CCAAATACGC CGATAAGCTG
GGGAATAAAA TCTACGGCAT CGAGGAAGGC AACGACGGCA ACCAGATCAT CCAATCCATG
ATCGACAAGG ACATGTTTGG ACTGGGCGAT TTCCAGCTCA TCCCTTCCAG TGAGGCCGGG
ATGCTCTCCC AGGTGCAGTC CTTCACCAAG GACGAACGCT GGATCGTCTT TCTGGGCTGG
GCCCCGCACC ACATGAACGA AATGATCGAC ATGAAGTATT TGGACGGAAG TACATCAGAG
ACCTTCGGCA AGAACGACGG TACGGCCACG GTCTACACCA TCGTGCGCGA CGGGTTTGTC
GAAGAAAACA AAAATGTCGC CAAGTTTTTG AAAAACCTCA TCTTCCCCAT CTCCATGATG
AACCAGATCA TGACCACCCT CCACGAAAAG GACGGGTTGA AACCCGTGGA TGCCGGCCTG
GATTGGGTCA AGGCCCATCC AGAGGTCTAC AAGGGATGGC TGGAAGGCGT GACCACCATT
TCCGGGGAAC CGGCTCTGCC GGCCTTTGAA CAATACCTGG AAACCGTCAA CTAA
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| Protein sequence | MSGFSKKVLV ALIAFAVLTM SASQVLAAKE VRFASVSWTG VTTKTELAVR ILRSLGYEAS
NTMVSVPIAF KALDTGEADI FLGNWMPTQA TMANKYFDKG TIEPLVASMP GAKYTLAVPT
YAYEGGLQHF KDIAKYADKL GNKIYGIEEG NDGNQIIQSM IDKDMFGLGD FQLIPSSEAG
MLSQVQSFTK DERWIVFLGW APHHMNEMID MKYLDGSTSE TFGKNDGTAT VYTIVRDGFV
EENKNVAKFL KNLIFPISMM NQIMTTLHEK DGLKPVDAGL DWVKAHPEVY KGWLEGVTTI
SGEPALPAFE QYLETVN
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