Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0110 |
Symbol | |
ID | 8417914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 147675 |
End bp | 149789 |
Gene Length | 2115 bp |
Protein Length | 704 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 645036675 |
Product | AsmA family protein |
Protein accession | YP_003196990 |
Protein GI | 258404248 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCTGGA AAAAAATAAC AGCAATTGTA TTGGGAGTGA TTCTTCTGGT GGTGGTCGGA GCTGCCGTCT TTCTTGTCAC CTATGACTAC AACGCCCTCA AGCCGCAAAT TGAGGCCGCG GTTGAGAAAA ACACGGGCCG CAAATTGACC TTGGACGGGG ATATCTCCCT GGCCCTCGGA CTGACCCCGG CCCTGGTGGT CGAGGATGTC TCCCTGGCCA ATGCGCAATG GGGATCGAAG CCGCAGATGC TTGAAGTGGG CCGCTTTGAA CTCCAGGTGG CCTTGCTGCC CCTTTTTCAG CGCAACGTGG AGATCCAGCG TGTTGTCCTC CGGGACACCT CGGTTCTCGT GGAGACGAAT ACACAGGGTG TTTCCAATCT GACGCTGCAC AAACCGCAGG CCGCAGCTGA ACCCGAGCAG GAAACCAGCC CCGAAGCGCC AAGCGATGCT GCTTCCCAAA AGGGCCCTCT GCCCGGATTG GAACTCGACA ATGTTCTTGT GGAAAACGGG TCCATTGATG TGCGCGACGC TGCTGGTGAA ACCGTGACCT CCTTCTCGGT GCAGCGTCTG GCGTTGCAGA CCCTGCCCAA TAAAGACGTC CAAATGACGT TTGACGGCCA GTTCAATGGT CAGCCGCTTT CGATGAGCGG CACCGTCGGT CCCCTGCAGG GACTGACCGA TGCCCAGCAG CAATGGCCCG TTGATCTTGC CGTGCAATCC GGTTCGGCTT CTGTTGCTTT GGAAGGAGCT ATTCGGGACG TCTTCGCCCA GCGTGGCCTG GATCTGGACC TTTCGGCGAC GATTCCCGAG CCAGCGGCCC TGAAGCCGCT TGTTGGCCAG GAGATTCCGG TGGCCGGGCC CATCGAGTGT ACAGCCACGC TGACCGACAC CGCGGCAAAA ACGTTTCGCC TCGACTCCTT GCAGGTGCGG CAAGGGGAAA ATCGCTTGAG CGGCACCGTT TCCCTCGCTC TCGGACCGCC CCTTTCAGTG ACCGCGGATT TGACCAGTCC GCTTCTGGAT GTGACCGCCA TCACCACCCA GCCTTCTGGC GATACCGCAC CTCCTCAGGA GCAACAGGGG GCTTCGTCCG CCGCCGGCGA CCAGCGCGTG TTTCCGGACA CAGAACTGCC GTGGGAGGCG CTCAGGCAGA TCAATGCCCA ATGTTCCCTC CAGGTTGGGA CGCTGGTTAT CCCCAAATTG CAGCTTGTTG ATACCCAGCT GGAACTCGGC TTGAAAGATG GTCTGCTCAC TCTTTCCCGT TTGACGGCCC GCTCCGGCGC CGAAGGGACG TTGAACGCCA CAATGACAGT GGACGCCCGT TCCAAGCAGC CGCGGCTGGA ATGTGCGGCA CGGATCGAGC ATTTTGCCCT GGAGCAGGTC CTGCGGGAAA CGAAATCCGA CAGTTTCCTC CAGGGCACGG TGAGTACCGA CTTGGCGGTC ACCGGACAGG GCCGTTCCGT GGCAGCGATC ATGGCCGGTC TGGACGGCAA GTTGCAGGCG AGCATGAGCG AGGGCCGGCT GGCGAATGCG AGGCTTGAGA AGTGGGGCGC TGATCTGGGA GCGAGTCTGT TCCGTCTCCT GAATCCGCTG GAAGAGCGCG GACGATTTAC CCCCATCCAA TGCGCTGTTC TTGTCGTGCC GATCGATTCC GGACTGGCCC GGGTGCAGGC CTTGGTCGTG GATACGCCGC GCATGCTCCT GCGGGGACAG GGATCCGTCA ATCTGCGCAC AGAAGCCCTG GATATCGGGC TGGATCCGCA GCCCAAGGAA GGATTGCAGA CCGGGGTTCT GGGCAAGTTG AGCCTCAGCT TCAGCGAACT GGCCCAGGCC TTCCGCCTCG GGGGGACCTT GGCCAAGCCG TCATTGGCGT TGGACAAGAC GAAAACGATC GAGACCTTGG GCAAAGGCAT CGGCGGGACA CTGCTCTTTG GTCCGGCCGG GGCCGCTGCA GGGCTGCTGG GTTCCAGCGA TACGTCCGAC AATCCGTGTC TGCAAGCCCT GGAGGGGGCG GATGCTGCCC AAGAGCAGCA GGCAGAAAAA CCCTCCTCGC CCCAGGAGCA AGTGGAAAAA GGGCTCGAAG ATTTGGGCGG TAAACTGCAA AAGCTCTTTG AGTGA
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Protein sequence | MGWKKITAIV LGVILLVVVG AAVFLVTYDY NALKPQIEAA VEKNTGRKLT LDGDISLALG LTPALVVEDV SLANAQWGSK PQMLEVGRFE LQVALLPLFQ RNVEIQRVVL RDTSVLVETN TQGVSNLTLH KPQAAAEPEQ ETSPEAPSDA ASQKGPLPGL ELDNVLVENG SIDVRDAAGE TVTSFSVQRL ALQTLPNKDV QMTFDGQFNG QPLSMSGTVG PLQGLTDAQQ QWPVDLAVQS GSASVALEGA IRDVFAQRGL DLDLSATIPE PAALKPLVGQ EIPVAGPIEC TATLTDTAAK TFRLDSLQVR QGENRLSGTV SLALGPPLSV TADLTSPLLD VTAITTQPSG DTAPPQEQQG ASSAAGDQRV FPDTELPWEA LRQINAQCSL QVGTLVIPKL QLVDTQLELG LKDGLLTLSR LTARSGAEGT LNATMTVDAR SKQPRLECAA RIEHFALEQV LRETKSDSFL QGTVSTDLAV TGQGRSVAAI MAGLDGKLQA SMSEGRLANA RLEKWGADLG ASLFRLLNPL EERGRFTPIQ CAVLVVPIDS GLARVQALVV DTPRMLLRGQ GSVNLRTEAL DIGLDPQPKE GLQTGVLGKL SLSFSELAQA FRLGGTLAKP SLALDKTKTI ETLGKGIGGT LLFGPAGAAA GLLGSSDTSD NPCLQALEGA DAAQEQQAEK PSSPQEQVEK GLEDLGGKLQ KLFE
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