| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0087 |
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| Symbol | |
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| ID | 8417891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 117707 |
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| End bp | 119569 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645036652 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_003196967 |
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| Protein GI | 258404225 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATATG TATTCCCCCG TGCCTTTGTC CTCGTGTTGT TGCTGGCCGT TGGCTGCGCA
CCGCTGACCA ACTCCCCGCA GTCGCAGCAC ACTGGGAAAA TGCAAAATGC CACTCCGGAG
AACACAGCGG TCAATGCGAG TTGCCCTGTG AGCGCTGCGC CGTCAGCCGT GACTGAGAAA
GCGGCAAGAA ATGCGTCGAA GCCTGAGCAG CAGGATCTTG CGGCTGAGGC TACCGGAAGC
GATGCCGATC TGAAACAGCC TCTGGAAGAA GAGGTCCAGG CGGATGTCTC CAGCAACGCC
ACTGACAAAG AGCCTGCGTT GACCCAGGCC GAAAAAAAGG CCCTGGAGTC GGAAGCGGAA
ATCCAGTTCG ACCTCGACGT TCGGGAAACC GAACGGATGC AGAAATTTTT CCGCTATTAT
ACCCATAAAC ACCGCAAGAC CTTTCAGCGT TGGCTCAAGC GGGCCGAACC GTATCTGCCG
CACATCCGGA AGGTGATCAC GGAAAAGGGG CTGCCGCAGG ACCTGGTTTT CCTGCCCTTT
GCCGAGAGTG GCTTCAACCC GTGGGCCTAT TCCCGGGCCG GTGCGGCCGG GTTGTGGCAA
TTCATGCCCG CCACCGGACG CCATTTCGAT CTCCGGGTTG ACTGGTGGAT GGATGAGCGC
CGGGATCCCT ACGCCTCTAC CCAGGCGGCG GCGGAATACC TCTCCCGCCT CTACGGTCAA
TTCCAGGACT GGTACCTGGC CCTTGCCGCC TACAACGCCG GTGAAGGCAA TGTTGGTCGG
GCCCTGGAGC GCAGCGGCTG CGACAATTTC TACGATCTCG CCTCGAGCAG ACGGTACCTC
AAATCCGAGA CCCGCAATTA TGTGCCCAAA TTTCAAGCTA TCCTCAAGAT CGTTCGCAAT
CTCGAGGAAC TCGGCTTCGA GCCCATCGAC TGGGACGCGT CTCCCGAGCC CTCGCAGGTG
GCCATTAAAG GGGGCACTGA TCTCATGGGC TTGGCCGATG CCACGGGTAT GAGCTGGTCC
GAATTTCGGA AAGCCAACCC GAAATTCCGG CGTACGGTCA GCCCCCCGGA CGCGAGCTAT
CAGGTGCAGA TCCCGGCCCC CAAGGTGGCG CAGGCCAAGG CCTATCTCGA CGGCCCCCGG
GCCCAGAAAA TGGCCGGCGG CAAACGGTAC CGGGTGCGCA GCGGCGATTC CTGGTGGCGT
ATCGCCCGCC GTTTTGACGT GCCGCTGACC GCGCTGATGC GCTTGAACAA TACCCGGTCG
AAGATGCTCC ATCCCGGGGA CTCGGTGCTT ATCCCGGTTT CCGGGGAGGC GGCCCGGGCC
CGCGTCGCAG CACAGGACGG GGAATATGTC GTGCAACGCG GTGATTCCCT CTGGGAGCTT
GCCCGCCGGA TGGACACCAC CGTCACCAAA TTGCGCCGGG CCAACAATTT GCAGAATACG
ACCCTTCGCG TGGGGCAGCG CCTGACCATT CCGGGGGGCT CCCAGAAGGC CAAGACCCGG
CAGATCGCCC AGCGCCGCTC CAACTATACG GTCAAAAAAG GCGACACCCT CTGGGAACTT
TCGCGCCGTT TCGGCCTCAG CCTCAATACG CTGGTTCAGG CCAACGGTAT CGGCAGGTCG
AGCGCGTTGC AGGTCGGGCA GAAGCTGTAC ATCCCGGACC GCGGCCGGAC GACGCAAGTG
GCCAAGGCCC GGGAGAAGGC CGCCCATCAA CGGCTGGTCC GGTACACGGT CCGCCAGGGC
GACAATTTGT GGACCATTGC CCGCCGTTTT GGTGTCAGTG CCGACGCCCT GCAGGACTGG
AACAACCTGG GCAAGAACGA ATTGATCCAC CCTGGCGACA ATCTTCGGGT CTATATTCAA
TAG
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| Protein sequence | MPYVFPRAFV LVLLLAVGCA PLTNSPQSQH TGKMQNATPE NTAVNASCPV SAAPSAVTEK
AARNASKPEQ QDLAAEATGS DADLKQPLEE EVQADVSSNA TDKEPALTQA EKKALESEAE
IQFDLDVRET ERMQKFFRYY THKHRKTFQR WLKRAEPYLP HIRKVITEKG LPQDLVFLPF
AESGFNPWAY SRAGAAGLWQ FMPATGRHFD LRVDWWMDER RDPYASTQAA AEYLSRLYGQ
FQDWYLALAA YNAGEGNVGR ALERSGCDNF YDLASSRRYL KSETRNYVPK FQAILKIVRN
LEELGFEPID WDASPEPSQV AIKGGTDLMG LADATGMSWS EFRKANPKFR RTVSPPDASY
QVQIPAPKVA QAKAYLDGPR AQKMAGGKRY RVRSGDSWWR IARRFDVPLT ALMRLNNTRS
KMLHPGDSVL IPVSGEAARA RVAAQDGEYV VQRGDSLWEL ARRMDTTVTK LRRANNLQNT
TLRVGQRLTI PGGSQKAKTR QIAQRRSNYT VKKGDTLWEL SRRFGLSLNT LVQANGIGRS
SALQVGQKLY IPDRGRTTQV AKAREKAAHQ RLVRYTVRQG DNLWTIARRF GVSADALQDW
NNLGKNELIH PGDNLRVYIQ
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