Gene Dred_3290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_3290 
Symbol 
ID4957792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp3568523 
End bp3570307 
Gene Length1785 bp 
Protein Length594 aa 
Translation table11 
GC content44% 
IMG OID640182476 
Producthydrogenases, Fe-only 
Protein accessionYP_001114615 
Protein GI134301119 
COG category[R] General function prediction only 
COG ID[COG4624] Iron only hydrogenase large subunit, C-terminal domain 
TIGRFAM ID[TIGR02512] hydrogenases, Fe-only 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGGATA ACCAGGATAA TCATGAAAAT AAAAGAAAGA TACATGTCAG TATCAATGAC 
CAGGAGTTGA CTGTACCCGA AGGAATAACC ATTCTAGAGG CAGCCCATGA AGCGGGTGTC
AAAATCCCTA CTTTGTGCCA TCTAGACCTG CATGACTTTC AATTATACAA TAAAACTGCT
TCCTGCAGAG TGTGTATGGT GGAACTGGTA GATGCAAGGA ATAATCGAAA TAAACTAGTA
CCCTCCTGTG TTACCAAAGT ACAAGAGGGA ATGATGGTAC GGACCGACAC CATCCGGGCT
ATCCAAGCTA GAAGAATGGC AGTGGAACTG CTTTTATCCA ACCACCCTAA TGAATGTTTC
ACATGTCCCA AAAACCTGGA ATGTGAGCTG CAGGCCCTTG CAGATGAACT GAATGTAAGA
AAGATTCGTT GGGAAGGTGA AAGGATGGAC TATCCTAAGG ATATGTCCAG CGATGCTATT
GTTAAGGATG CCAACAAGTG TATCTATTGC AGGCGCTGTG AGACTGCATG CAATGAGGTG
CAGACCTGTG GAATTCTTTC AGGCATCGGA CGTGGCTTTA ATGCTTTTGT TGGTCCCTTT
GCCAATATCC CCATGGTGGA GTCTTCTTGT ACCTACTGCG GACAATGCGT AATGGTTTGT
CCCACAGCAG CCCTTACCGA GGTCTATCAC ACCGATAAGG TTTGGGAAGC CATCAATGAT
CCTGATAAGC ATGTGATAGT CCAAACTGCC CCTGCAGTAC GTGTTGCACT GGGAGAACTT
TTCGGCATGG AAGCCGGGAC CGTTGTTACT GGTAAAATGG TAACTGCTCT CAAACGTATG
GGATTTGATG AAGTATTTGA TACGGATTTT GGAGCAGACC TTACTATAAT GGAGGAGGCA
TCGGAGCTTA TTTATCGCCT CAAAAACAAT AAAACATTAC CAATACTGAC AAACTGCTGT
CCCGCCTGGG TCAAGTTTAT TGAGCACCAA TTTCCAGAGT TGATTCATGT TCCTTCTACC
TGTAAGTCAC CACACATTAT GTTTGGCACC ATTGCCAAAA CTTATTATGC AGAGAAAAAT
GGGTTGGATC CTGACAATAT TGTGGTAGTA TCGGTGATGC CCTGTATAGC CAAAAAAGCA
GAGGCAAAAC GGCCGGAACT TACGAAGGAC GCACATAACA ATGTGGATAT TGTTATTACA
ACCCGTGAAT TGGGAGCTAT GATCAAGGAA GCCGGAATTG AATTTGTCAA ACTGCCGGAT
AGCGAATTTG ACAGTCCACT GGGAGAATCA ACTGGTGCAT CAGTTATATT TGGTACTGCC
GGGGGAGTCA TTGAAGCCGC CCTCCGTACC GCTTCTGAAT GGATGACAGG TAAACCCCTT
GATAGGGTTG AGTTTGAGGA GTTAAGGGGA ATGGAAGGTG TTCGTAGGGC TACTGTAAAA
ATTGGTGATC AGGAGCTTAA AATAGGAATT GCCAGCGGTC TGGGTAATGC GCGGCATATT
CTAGAGGATA TTAGGGATGG AAGAGCCGAT TATCATGCCA TTGAAATCAT GGCTTGCCCC
GGTGGCTGTA TTGCTGGAGG GGGACAACCT TACCACCATG GTAACCATGA GATTATCAAA
AAACGCAGAG AAGCTATTTA TGAAGAGGAT AGAAGGAAAA AAGTAAGAAA ATCTCACGAA
AATAAAGAGA TACTGGAGCT TTATAAGAAT TACCTGGGAG AGCCCTTTGG CAAACTGGCA
CATGAACTTC TCCATACTCA TTTTGAGGAA AGAGAAAGAA TTTAG
 
Protein sequence
MPDNQDNHEN KRKIHVSIND QELTVPEGIT ILEAAHEAGV KIPTLCHLDL HDFQLYNKTA 
SCRVCMVELV DARNNRNKLV PSCVTKVQEG MMVRTDTIRA IQARRMAVEL LLSNHPNECF
TCPKNLECEL QALADELNVR KIRWEGERMD YPKDMSSDAI VKDANKCIYC RRCETACNEV
QTCGILSGIG RGFNAFVGPF ANIPMVESSC TYCGQCVMVC PTAALTEVYH TDKVWEAIND
PDKHVIVQTA PAVRVALGEL FGMEAGTVVT GKMVTALKRM GFDEVFDTDF GADLTIMEEA
SELIYRLKNN KTLPILTNCC PAWVKFIEHQ FPELIHVPST CKSPHIMFGT IAKTYYAEKN
GLDPDNIVVV SVMPCIAKKA EAKRPELTKD AHNNVDIVIT TRELGAMIKE AGIEFVKLPD
SEFDSPLGES TGASVIFGTA GGVIEAALRT ASEWMTGKPL DRVEFEELRG MEGVRRATVK
IGDQELKIGI ASGLGNARHI LEDIRDGRAD YHAIEIMACP GGCIAGGGQP YHHGNHEIIK
KRREAIYEED RRKKVRKSHE NKEILELYKN YLGEPFGKLA HELLHTHFEE RERI