| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_3033 |
|---|
| Symbol | |
|---|
| ID | 4956665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 3292559 |
|---|
| End bp | 3293581 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640182222 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001114361 |
|---|
| Protein GI | 134300865 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAAA ACAGTACACT ATTAATAACC GGTGGTACAG GAAGTTTTGG TAATGCTGTA
TTAAACCGAT TTTTAACTAC TGATATCTCT GAGATTCGCA TCTTCTCTCG GGACGAGAAG
AAGCAAGATG ATATGCGTAA ACTCTATAAA AACGATAAAA TTAAATTTTA CATTGGTGAT
GTTAGAGACA TTGCCAGTGT AAAAAACGCC ATGCATGGTG TGAACTATAT CTTTCATGCG
GCAGCCCTTA AACAAGTGCC ATCCTGTGAA TTTTTCCCAT TGGAAGCAGT GAAAACTAAC
GTGTTAGGAA CCGACAACGT ACTTACAGCC GCTATCGAGT ATGGGGTTAA AAAAGTAATT
TGCTTATCTA CTGACAAAGC TGCATATCCT ATTAATGCAA TGGGTATATC AAAAGCCATG
ATGGAAAAAG TCTTAGTAGC CAAATCAAAA ACTGTAGACC CGGCTAAAAC CCTTATCTGT
TGCACACGAT ACGGAAACGT TATGGCATCC AGAGGTTCTG TAATCCCCCT ATTTATTGAT
CAAGTAAAGA GTGGACAACC TTTAACGGTA ACAGATCCAA GTATGACCAG GTTTTTAATG
AGCCTTGAAG AAGCAGTGGA ACTTGTAGTT TTTGCATTTC AAAATGCCCA AGCAGGTGAT
ATTTTAGTGC AGAAATCACC GGCCTCCACC ATTGGTGACT TAGCTCAAGC AATTAAAGAG
TTATTTAACG TGAATAACGA GATTAAAATA ATAGGTACTC GCCACGGAGA AAAGCTTTAT
GAAACACTGC TTACCAAAGA GGAATATATA GTAGCTCAGG ATTTAGGTGG ATTTTTTAGA
GTACCCGCTG ACAAAAGAGA TCTTAATTAT GATAAATATT TCGTAGAAGG AAACCAGAAG
CTATCTTCAG AAGAAGAGTA TAACTCTCAT AATACATATA GGCTTAATAT AGAGCAGATT
AAAGATAAAT TATTGTCCCT TGATTATGTA AATAACGAGT TAGAAAGCTG GAGTAAACCA
TGA
|
|---|
| Protein sequence | MFKNSTLLIT GGTGSFGNAV LNRFLTTDIS EIRIFSRDEK KQDDMRKLYK NDKIKFYIGD
VRDIASVKNA MHGVNYIFHA AALKQVPSCE FFPLEAVKTN VLGTDNVLTA AIEYGVKKVI
CLSTDKAAYP INAMGISKAM MEKVLVAKSK TVDPAKTLIC CTRYGNVMAS RGSVIPLFID
QVKSGQPLTV TDPSMTRFLM SLEEAVELVV FAFQNAQAGD ILVQKSPAST IGDLAQAIKE
LFNVNNEIKI IGTRHGEKLY ETLLTKEEYI VAQDLGGFFR VPADKRDLNY DKYFVEGNQK
LSSEEEYNSH NTYRLNIEQI KDKLLSLDYV NNELESWSKP
|
|---|
| |