Gene Dred_2756 details

Gene Information

• Locus tag: Dred_2756
• ID: 4955242
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfotomaculum reducens MI-1
• Kingdom: Bacteria
• Replicon accession: NC_009253
• Strand: -
• Start bp: 2988090
• End bp: 2989976
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 640181936
• Product: TRAP dicarboxylate transporter, DctM subunit
• Protein accession: YP_001114085
• Protein GI: 134300589
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.95761
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAACA ACATTACTCA GAATGATATA CAAAATGCCA AGCCAAAAAG CTTGTTGCGA 
TGGCTGGATG ACAATCTTGA AAAACCCATC CTTTTTATCG GGATGTTGTC GATTATATTA 
ATTATTACCT ACCAAACTGC TTATCGCTAT ATAATTACGC ACATGTATGA AGGTTCCGGG 
GCTGCCACCT GGACTGAAGA GTTAGCCCGT TATATCTTTA TCTGGATATC GTACCTGGCC 
ATTCCCCTTG CTGTTAAAAC TCGCAATAAT ATACGGGTAG ATATTATCTA TGATAGGTTG 
CCGAAACGTT TTCAAAAAGT AAGCTGGATT ATTGTTGATG TATGTTTCCT TTGCTTGAGC 
GTTGTGGTGT TCTTAAAAGG CTTAGGTCAC TTAGAAATGC TGCTTAATAT GCCTCAGACC 
ACCCCTGCTT TGCAAATACC TTACTTTATT CCCTATTTAA TTCTCCCCAT AGGTTTTGGA 
CTCATTAGTT TACGTGTAAT TCAAGACCTT GTAAGACAAG TAAAAGAATG TGGTATAAAA 
GACTCACTTA TTGGTGCTAT CTTCTGTGGG GTTATAGCTT CCCCGCTGTT GCTAGGTATT 
GAGCTAGATG CCTTGGTTTG GTTGTTTGGT TACTTCTCAA TATTTTTAGT AATTGGCGTA 
CCCATTGCCA TTGCTTTGGG GCTATCCGGG TTAGCTACTA TCATAGGGGC AAATACGTTG 
CCGATAGATT ATGTTGCCCA ACTTTCTTTT ACATCAATTG ACAGTTTTCC AATTATGGCA 
ATTCCATTCT TTATTGCAGC CGGTGTTTTC ATGGGAGCAG GTGGTCTTTC TAAGAGACTT 
TTGGCCCTGG CTGATGAAAT GCTGGGTTCC CTCTACGGAG GTATGGCTCT TGCAACCATT 
GCAACCTGTA TGTTCTTTGC AGCCATCAGT GGTTCGGGTC CGGCAACCGT TGCAGCCATC 
GGAGCCCTTA CAATTCCTGC TATGATCGAG AGGGGCTATG ATAAACACTT TGCGGCAGCA 
CTAGTTGCCT GTGCCGGTGC CATCGGTGTA ATGATTCCTC CCAGTAACCC CTTTGTAGTG 
TACGGCGTAT CGGCCCAGGC CTCTGTTGGT AAGTTGTTTA TAGGTGGTAT CGTCCCAGGC 
GTATTAACGG GTCTTGTGTT AATGGGTATC AGTTATTTCT ACTCTAAGAA AAACAACTGG 
AAAGGCGAAG AACGCGAGCG TAACTTTGGC ACCTTCGTAA AAGCTTTCTG GGATGCCAAG 
TGGGCATTGA TGGTGCCAGT TATTATATTA GGCGGTATCT ATGGCGGTTT CATGACGCCC 
ACCGAGGCAG CAGCTGTATC AGCTTTTTAT GGATTAATCG TAGGTGTGTT TGTTTACAAG 
GAAATTAATC TTAAAAATAT TACAGAGTGC TTCATGGAAG CTTGCAGCAC TTCAGCAGTT 
GTTATTGTGC TAATGTCTAT GGCGACAATC TTCGGTAACA TTATGACTAT CGAGCAGGTT 
CCCAACAAAA TTGCCGAGTT TATCCTTGGT ATTACCGAGA ATAAGATCAT GATCTTACTA 
ATGATTAATA TCTTACTTCT GATAGTGGGT ACGTTTATGG AAGCTTTAGC AGCTATTGTA 
ATCCTAACTC CCATCTTGCT GCCTATTGTT ACAAAGGTAG GAGTTGATCC GATTCACTTC 
GGTGTTATCA TGGTTGTTAA CCTGGCCCTT GGATTTATTA CTCCTCCTGT TGGTGTTAAC 
CTATTCGTTG CAAGTGGTGT TGCCAAACTT AAAATTGAAG ACTTAGCGAA ATCGGCGATG 
CCATTACTGG GTGCGATGAT TGTTGTATTA CTCCTAGTCA CTTATGTACC TTCAATATCC 
TTGTTCCTGA CAACGCTCAT TAAGTAA 

 

Protein sequence

MANNITQNDI QNAKPKSLLR WLDDNLEKPI LFIGMLSIIL IITYQTAYRY IITHMYEGSG 
AATWTEELAR YIFIWISYLA IPLAVKTRNN IRVDIIYDRL PKRFQKVSWI IVDVCFLCLS 
VVVFLKGLGH LEMLLNMPQT TPALQIPYFI PYLILPIGFG LISLRVIQDL VRQVKECGIK 
DSLIGAIFCG VIASPLLLGI ELDALVWLFG YFSIFLVIGV PIAIALGLSG LATIIGANTL 
PIDYVAQLSF TSIDSFPIMA IPFFIAAGVF MGAGGLSKRL LALADEMLGS LYGGMALATI 
ATCMFFAAIS GSGPATVAAI GALTIPAMIE RGYDKHFAAA LVACAGAIGV MIPPSNPFVV 
YGVSAQASVG KLFIGGIVPG VLTGLVLMGI SYFYSKKNNW KGEERERNFG TFVKAFWDAK 
WALMVPVIIL GGIYGGFMTP TEAAAVSAFY GLIVGVFVYK EINLKNITEC FMEACSTSAV 
VIVLMSMATI FGNIMTIEQV PNKIAEFILG ITENKIMILL MINILLLIVG TFMEALAAIV 
ILTPILLPIV TKVGVDPIHF GVIMVVNLAL GFITPPVGVN LFVASGVAKL KIEDLAKSAM 
PLLGAMIVVL LLVTYVPSIS LFLTTLIK