| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2207 |
|---|
| Symbol | |
|---|
| ID | 4956394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 2414799 |
|---|
| End bp | 2417201 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640181383 |
|---|
| Product | homocysteine S-methyltransferase |
|---|
| Protein accession | YP_001113547 |
|---|
| Protein GI | 134300051 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase
[TIGR02370] methyltransferase cognate corrinoid proteins, Methanosarcina family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0270016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCTTTTA GGAAAAGAGT AAAAAAAGAA GTTCTCATCA TTGATGGCGC AATGGGTACA
CTGTTGCAGC AGAGGGGTCT GCCAGGGGGT TGGTGCCCTG AGGAATGGAA CCTTAGTCAC
CCGGAAGCCG TTAAAGAGAT ACATAAACTT TATTTAGAAG CAGGGGCTGA CATTATCACC
ACCAACACCT TTGGGGCCAT ACAATTAAAA CTGGCAGATT ATCATTTGGG TGATCAGGTT
AAGGAGATTA ATCAGGCAGC AGTTAAACTG GCAAAGGAGG TGGCCCAGCC CTACGGGGCT
ATGGTAGCCG GTTCCGTGGG ACCCTTAGGT AAGTTTTTAC AACCACTGGG CACCATGACC
TTTGAAGAAG CTTATCAGCA GTTTTATGAG CAATGTGCGG CGATGGTGGA AGCCGGTGTG
GATTTAATTC TCTTTGAAAC CTTTGGAGAT ATTGGAGAAA TGCGTGCAGC CCTTATTGCT
GCGGCCGACG CCGGAGATGT ACCGGTGGTG GCCAGTTTCA CCTTTGATGA AACTGGCAGG
ACCTTTACAG GAACAGACCC GGAGACTGCT GCGGTGGTGG CAGAAAGGCT TGGTATTGCA
GCCATTGGGG TCAATTGCTC GGTGGGGCCC CGTCAATTGG AGGGTGTGGT CAGGAAGCTT
ACAGAAAGTA CTAATTTACC GGTGTTGGTT TCACCCAATG CGGGTATGCC AGAAATTATT
GGAGGAAAAA CAGTTTTTAG GGAAACACCG GAGATTATGG CGGAGTATGC ACAACGTTTC
GTGGATTATG GGGCATCCAT TTTAGGAGGC TGCTGTGGAA CCACGCCAAA ACATATCCAG
GCCATTTACC AACAGGTGAA AAAACTAAAA CCAAAGTGTC GCAATAAAAG GTTTGGTCTG
AGGGTGGCCA GTCGAGTAAA GACCGTAACC ATCCAGCCCA GCGGAGTTCC TGTGGCCATT
GGGGAGCGCC TTAATCCTAC AGGTAAAAAG GCCCTACAGG CAGAAATTCG GGAGGGAAAA
ACAGAGATTA CCCGCCGGGA TGCCTTGACT CAGGTACAGG CAGGGGCAGA GATTTTAGAT
GTTAATGTCG GTGTGGGGGG AGTCGATCAG GTGGCTGCCA TGGAACGGGC TGTCCAAGCG
GTACAGGTTT TGGTAGAGGC ACCCCTTTGT ATTGACAGCA CCGACCCCAC AGTCATTGAA
CATGCCTTAA AACTTTATCA TGGTAAAGCC CTTATTAATT CTGTGAACGG TGAGGAGAAC
AGCATTGAAA CCATTCTTCC TTTGGCCAAG CGATATGGAG CTGCCCTCAT TGGACTTACT
CTGGATGATG AAGGAATCCC ACCCACAGCT GCAGGCAGAT TGGCAGTGGC CCGCAGACTG
GTAGAAAGAA CCGAGGCAAT GGGTATCCCA AGAGATGATT TGATGATGGA TTGCCTGGTG
CTAACTGTCA GTGCCCAACC GGAAGGAGTG CCGGAGACGC TGGAAGCCAT CCGGCTGGTT
AAGCAGAAAC TGCAAATCAC CACTAGTTTG GGAGTTAGTA ATGTGTCCTT TGGGTTACCT
AACCGTGTAT TAATAAATGC GGCCTTCTTT GCCATGGCCT TAAACGCAGG TTTAGATGCA
GCCATCCTAA ATCCTCAGGA TCAGCGTATG ATGGAGACCC TTAGGGCTTC CGCAGTTCTT
ACCGGTAGAG ACGTACGGGC AGAAAAATAC ATTGCCATAG AACAACAGAC CCACAATGGT
AGCAAAATGG AAACAACGGG TGAACAGATG AAGGCTTCCA CTCCCCTGGA TATTTTGTAT
CAAGCAGTGT TGTCCGGAGA TAAAGATAAT ATTGTTTCCT ATATTAATGA AGCTCTGAAA
ACAGGTTTGT CGCCCATGGA ACTGCTGGAC AAGGCTTTGA TACCAGGAAT CGAAGAAGTG
GGACGGAGGT ATGGAGCAGG TATTTACTTT TTACCTCAAC TGATGATGGC TGGAGAAACC
ATGACCAAAA GCTTTGAACG ACTTAGACCG GAATTAGCCA AAGGACCTGC CAAGAAGGCG
GGTACCGTTG TACTGGCCAC TGTTAAGGGA GATATTCACG ACATTGGCAA AAACATTGTT
TCGGTCATGC TGGCCAACCA CGGCTTCGAG GTCATTGATC TGGGAAAAAA TGTAGCCAAT
GAGGAGATCC TCCGGGTGGC TGCAGAACAA AAGGCAAATA TTATAGGGCT GAGTGCCCTT
ATGACCACTA CAATGGTGCA TATGCAGGAA ATAATCAAGT TGGTCAAAGA ACAAGGTCTA
AACTGCAAAG TAATGGTAGG GGGCGCCGCA GTTACAGAAC ATTATGCAAG GGAGATTGGT
GCAGACGGTT ATGCCATTGA TGCGGTAGAA GCTGTGAATG TTGCCAAAAA ATTAGCCAGT
TAG
|
|---|
| Protein sequence | MSFRKRVKKE VLIIDGAMGT LLQQRGLPGG WCPEEWNLSH PEAVKEIHKL YLEAGADIIT
TNTFGAIQLK LADYHLGDQV KEINQAAVKL AKEVAQPYGA MVAGSVGPLG KFLQPLGTMT
FEEAYQQFYE QCAAMVEAGV DLILFETFGD IGEMRAALIA AADAGDVPVV ASFTFDETGR
TFTGTDPETA AVVAERLGIA AIGVNCSVGP RQLEGVVRKL TESTNLPVLV SPNAGMPEII
GGKTVFRETP EIMAEYAQRF VDYGASILGG CCGTTPKHIQ AIYQQVKKLK PKCRNKRFGL
RVASRVKTVT IQPSGVPVAI GERLNPTGKK ALQAEIREGK TEITRRDALT QVQAGAEILD
VNVGVGGVDQ VAAMERAVQA VQVLVEAPLC IDSTDPTVIE HALKLYHGKA LINSVNGEEN
SIETILPLAK RYGAALIGLT LDDEGIPPTA AGRLAVARRL VERTEAMGIP RDDLMMDCLV
LTVSAQPEGV PETLEAIRLV KQKLQITTSL GVSNVSFGLP NRVLINAAFF AMALNAGLDA
AILNPQDQRM METLRASAVL TGRDVRAEKY IAIEQQTHNG SKMETTGEQM KASTPLDILY
QAVLSGDKDN IVSYINEALK TGLSPMELLD KALIPGIEEV GRRYGAGIYF LPQLMMAGET
MTKSFERLRP ELAKGPAKKA GTVVLATVKG DIHDIGKNIV SVMLANHGFE VIDLGKNVAN
EEILRVAAEQ KANIIGLSAL MTTTMVHMQE IIKLVKEQGL NCKVMVGGAA VTEHYAREIG
ADGYAIDAVE AVNVAKKLAS
|
|---|
| |