| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2124 |
|---|
| Symbol | |
|---|
| ID | 4955827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 2320097 |
|---|
| End bp | 2321002 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640181295 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001113466 |
|---|
| Protein GI | 134299970 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.308322 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAATG AACAAATGGT AAAAATGTTT TTAATCTACC AAGAAAGTAG AAACCTTTCC
CCTCGTACTC TTGAATGGTA CAAATACATT ACCGCTAAAT TCATCAATTA TTGCAACGAC
AATGATATTC AAATTGATTC CCTTAAAACA CCCGAAGCCC GTCAATGGGT AAACTGGCTT
CAAAAAGGTT CAGAAACTCA GTATAAGGGG AATTCCATTA ACTGTCATAT AAGAGCCATC
AAAACCATGT TCAACTATTT TATGGAAGAT GAATATATCG ACAAAAATCC ATTTCATAAA
GTCAGTAAAA TTAAGGTTGA TAATACTATC ATCCATACTT TTGAGCCAGA TGAAATTAAG
AAAATGCTTG CTCAACTAAA CAAAAATACA TTTTATGATC TGCGAGACAA TCTCATGCTC
AGGATAATGT ACGATTGTGG ATTGCGTGTC AGTGAGATAA TCAATCTAAA AATCACCGAC
ATAGACACAG ATAAAAATAT GTTTAAGGTA TTCGGCAAAG GCCACAAGGA AAGAATGGTT
CCTTTTGGAC GCTCTGTTAA ACGAGAATTG GTAAAATATT TACCTAAACG AAATAAGGCA
GTTCCACATG ATTTAGATGA AGGATATTTA CTTTGTACAA ATCAAGGGAC ACCCCTACAC
AAGCGTAATA TTCTGCGAAA AATTAGAATT GTTGGTCAAG GTGCAGGGAT TGAAGGTAAA
CGTCTTAGCC CCCACACCTA CCGCCATTCC TTTGCAAAAC AATATTTAAT GGCAGGTGGA
GATTTATTTT CACTCCAAAC TATCATGGGA CATAGTTCGC TCAATTCTAC CAGACGTTAT
ATTACCTTAC TCACCGAAGA TATTCAAAAG CAACACCGTC AATTCAGCCC CTTAGACAAT
CTTTAG
|
|---|
| Protein sequence | MTNEQMVKMF LIYQESRNLS PRTLEWYKYI TAKFINYCND NDIQIDSLKT PEARQWVNWL
QKGSETQYKG NSINCHIRAI KTMFNYFMED EYIDKNPFHK VSKIKVDNTI IHTFEPDEIK
KMLAQLNKNT FYDLRDNLML RIMYDCGLRV SEIINLKITD IDTDKNMFKV FGKGHKERMV
PFGRSVKREL VKYLPKRNKA VPHDLDEGYL LCTNQGTPLH KRNILRKIRI VGQGAGIEGK
RLSPHTYRHS FAKQYLMAGG DLFSLQTIMG HSSLNSTRRY ITLLTEDIQK QHRQFSPLDN
L
|
|---|
| |