Gene Dred_2003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_2003 
Symbol 
ID4956874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp2201638 
End bp2202480 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content37% 
IMG OID640181170 
ProductKu domain-containing protein 
Protein accessionYP_001113346 
Protein GI134299850 
COG category[S] Function unknown 
COG ID[COG1273] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02772] Ku protein, prokaryotic 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACCCC TTTGGAAAGG TGCAGTAAGT TTTGGTTTAG TGTATGTGCC GGTTAAGATG 
TATGCCGCCA CGGAAAAGAA AAGCATAAAA TTTAATTATC TACATGATAA ATGTAAAACA
CCCATTCAAT ATCGTAGGTA TTGCCCCTAT TGTAATACGG AAATAAACAA CGAAGAAATT
GTAAAAGGCT ATGAATATGA AAAGGGTAAA TATGTGGTGA TGAAAGATGA AGACTTTGAA
AACTTGCCTG GAGAAAAAAC AAAAAGCATT AACATTGTTG ACTTTGTTGA TTTAACTGAT
ATTGATCCTC TTTATTTTGA TAAGGGTTAC TATCTAGCGC CGGGTGAAGG GGGACAAAAG
GTCTACGAAT TACTAAAAAG ATCAATGCAA GAAACTGGCA AAGTGGCGGT GGCTAAGGTT
ATCATTCGGG ACAAAGAATC ACTTGCTGCT CTTAGGGTGG CTGATGGTGT TCTTACTATT
AATACCATGT TTTACCCAGA TGAAGTAAGA AAACCAAGTG GTATTCCAGA ATTGGACTAT
GAAATAGAAC TTCACGAAAA TGAATTGAAA ATGGCAGTAA ATCTTATTAA TAATTTATCA
GCACCCTTTA AACCGGAAAA ATACACAGAT GAATATCGTC AACAACTTTT AGAAGTGATC
CAGGCAAAGA TTGCTGGGGA AGAGGTAGAA GCAGTTCCTG CTGTCCAAAC CGATAAAGTG
GTAGATCTAA TGTCTGCATT GAAAGCAAGT ATTGATCTGG CCAAACAGGA AAGGGATAAC
GCATTAAAGA AAGATGCCAC TAAAAAGAAA ACCACCAGGA CAAAAAAGGC CACGGCCTCG
TAA
 
Protein sequence
MRPLWKGAVS FGLVYVPVKM YAATEKKSIK FNYLHDKCKT PIQYRRYCPY CNTEINNEEI 
VKGYEYEKGK YVVMKDEDFE NLPGEKTKSI NIVDFVDLTD IDPLYFDKGY YLAPGEGGQK
VYELLKRSMQ ETGKVAVAKV IIRDKESLAA LRVADGVLTI NTMFYPDEVR KPSGIPELDY
EIELHENELK MAVNLINNLS APFKPEKYTD EYRQQLLEVI QAKIAGEEVE AVPAVQTDKV
VDLMSALKAS IDLAKQERDN ALKKDATKKK TTRTKKATAS