Gene Dred_1725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1725 
Symbol 
ID4956768 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1884229 
End bp1885956 
Gene Length1728 bp 
Protein Length575 aa 
Translation table11 
GC content42% 
IMG OID640180900 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_001113077 
Protein GI134299581 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATAAAG GTTTTTTAAC TGTAAAAGAG ATGTTGTATA AGGATCTTCT ATCGGTTACT 
CCAGAAGAAA CCATAGGTAA AGTTAGGGAA AAGGGTGTTC CGAACCGTCC TGTTGTGCTG
GCAATGGATG GTGATCGTTT AGTGGGAGTA ATGCTTTGGA AGGATGTTAT TAATCGTAAG
CTCGAATCAG ATGTGCTAGT GAACCAAGTG ATGAGAAGGG ATTTTTCTTC TCTGGATGAA
GAAGACCTTG AGAGGGAAAT CTTGGCCTTT TTACCGGAAC TTCGCTACCA TGCCCTTGTT
TGCCGAAATA ATCAGGGAGA TATATTAGGG GTTCTATCCT ATGATCAGGT ATTTCATGAT
CTTGCTTTAC GAGTTTGTGA AACCGAAGCA AGGATTAATG CGGTTGTGGA AACTGTAGAC
GAAGCTGTAT GTATTGTTGA TAATAATGAT ATGGTTACCA GCTGGAACAG CCGTGCTGAA
GAACTATATG GAATAAAAGC ACAGGATATC ATTGGCAAAC CGATTTGTAG CTTTTTTACC
AACCTGGTGG TAACCAGAGT GAATAAAGAG TGGCAGGAAA TACGATCTCT ACACCATCAA
CCTGTACCGG GTACCCACGT TTTAATAAAT GCTACTCCTG TACGATTAGG ACCTAAAGTG
ATAGGTGGTG TAACCGCTGA AAGGGATGTT ACTGAGATAG TACAACTGAA TCAAAAATTA
AACCAGGCCA GTTCTCAAGT GCAGCGTCTG GAAAAGGAAA TTGATAAATT TTCTACCGAC
CGAAATCCCT TTGCTGCTGT CAAGGGTCAC CATAAAAGAT TGACAGAATT AATCAATGTT
GCCAGAAAGG CAGCCTTAAC CAGTGCTGTT GTGCTATTAC GTGGGGAAAG CGGTACAGGC
AAGGAATTGT TTGCTAAGGC AATTCATGAA GCAAGTCCCC GTATAGACAA AAAGTTTTGT
GTTATCAATT GCGCCGCAAT TCCCCCCAGT CTTTTTGAAA GTGAAATGTT CGGTTATGAG
AGTGGTGCCT TCACAGGTGC CGATAAAAAA GGGAAAATAG GTGTGTTTGA AATGGCAGAT
GGCGGCACTT TGTTTCTAGA TGAAATAAGT GAATTGCCGC TGGATATGCA AGTTAAGTTG
CTCAGAGTTC TGCAAGATGG TGTATTCTTT AGAATTGGCG GTTCAACTCC CATAAAAGTA
GATGTAAGAA TTATAGCTGC CACCAACCGT TCCTTGGAGG ATATGATGGC CCATGGAACC
TTCCGGGAAG ACCTTTATTA CCGTTTGAAT GTCGTATCCT TGGAAATCCC ACCCTTGCGC
GAGAGAAGAG AAGACATTCC GGAACTGGTA TACTTATTCT TACAAGAATT CAGTCAACTT
TATAATAAGC AGATTTCCAA ATTGGAGCCA GGTGTCATGG CTACCTTCTT GGCTTACTCA
TGGCCCGGAA ATATTAGGCA GCTAAAGAAT ATCATCGAAC GAATGGTTAT CCTAACAGAG
GGTGACACAG TTCTTGAAAG TGCCATTCCT GAATCATTAA AGCTGAGTTC CAGACAGGAC
CAAGCCACTG CTACCATAGG GTTGGCCTCA GTCACTGAAC AAACAGAACG GGAACTTATC
ATACGAACCC TAAAGCAGGT CAATGGCAAT CGATCAGAAG CTGCCCGTAT GCTGGGTATT
CCTAGAAGTA CACTATATTA TAAAATGCAT CAACTGGGAA TTATGTAA
 
Protein sequence
MHKGFLTVKE MLYKDLLSVT PEETIGKVRE KGVPNRPVVL AMDGDRLVGV MLWKDVINRK 
LESDVLVNQV MRRDFSSLDE EDLEREILAF LPELRYHALV CRNNQGDILG VLSYDQVFHD
LALRVCETEA RINAVVETVD EAVCIVDNND MVTSWNSRAE ELYGIKAQDI IGKPICSFFT
NLVVTRVNKE WQEIRSLHHQ PVPGTHVLIN ATPVRLGPKV IGGVTAERDV TEIVQLNQKL
NQASSQVQRL EKEIDKFSTD RNPFAAVKGH HKRLTELINV ARKAALTSAV VLLRGESGTG
KELFAKAIHE ASPRIDKKFC VINCAAIPPS LFESEMFGYE SGAFTGADKK GKIGVFEMAD
GGTLFLDEIS ELPLDMQVKL LRVLQDGVFF RIGGSTPIKV DVRIIAATNR SLEDMMAHGT
FREDLYYRLN VVSLEIPPLR ERREDIPELV YLFLQEFSQL YNKQISKLEP GVMATFLAYS
WPGNIRQLKN IIERMVILTE GDTVLESAIP ESLKLSSRQD QATATIGLAS VTEQTERELI
IRTLKQVNGN RSEAARMLGI PRSTLYYKMH QLGIM