| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1646 |
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| Symbol | |
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| ID | 4956065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | - |
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| Start bp | 1798596 |
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| End bp | 1801082 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640180822 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001112999 |
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| Protein GI | 134299503 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.651104 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCAAAAC GCAAAAGCCG AAGGCTTAGA CCTGGACGCT TAATTTTACT TATTACAATT
CTCATTGTTA CGATAGGTGG CCTGGCATCG CTGGGCTTTT TTGCCTATGC AATGTCGGAC
ATGCCTGCCT TTAACCCCCA GGCCTTAGAG AATATGGTGC CCACTTCAAT TTATGATAAG
GATGGCAACC TAGTAACAAG AATTGGTACA GAAAACCGAG AACCTATTCA ATTAAGTGAA
GTACCTGCAA CAGTGAAGGA TGCCGTTCTA GCAACTGAAG ATGAGCATTT CTACGATCAT
CACGGCATAA ACTTTCGTAG CTTAGGGCGT GCTGTTTTTA GAAACGTAGC TGCTGGTGAA
ATCCGTGAAG GCTTTAGCAC AATTACCATG CAGTTAGTTA AACTATCTTA CCTGTCACCA
GAACGTAGCA TGAAACGAAA AATGCAGGAA GTTATTTTAA CCCTCCAGAT GGAAAGACAT
TTCATGAAAG ATGAAATCTT TGAAATGTAC CTTAACAAAA TATACTTTGG TCAAGGAGCC
TATGGGATTC AATCTGCCGC CCAAATATAT TTTGGCAAGG ATTTAAAAAC CGATGAATTA
ACCCTGGAAG AGGCTGCTTT TCTGGCAGGA ATACCCCAGG CGCCATCTGC TTACTCTCGC
TACCTGGACA GTGGAAAATC CTTAGATGAT GGAGAGAACT CAGAACAAGA TAAGAAAAAA
CTTGAAGAAC AGCATCAAAA GGATTATGAC TTAACTCTTA ATCGGCGTAA TATTGTTTTA
TTAAGAATGA AAGAGGCCGG TAAAATTACG GAAGAGGAAC GTCAAGCTGC TGCTTCAAAA
CCCCTGCCTG ACGGTACTAA AATGCAGGCA ACTAGGTATC CGTACCCCTA CTTTATTGAT
TATGTAACAG AAAAACTGGT TCAAAAATAT GGGCCAGATA TGGTCTATAA GGGTGGTCTT
AAGGTTTATA CAACTTTAGA CCCCAAAATA CAAAAAACCG TTGAATTGGC CATGGCCAAT
GCCAAAAATT TTCCTAATTA CAAACCGGAC AAAAACGGAC TACCACAACC CCAGGGTGCT
GCAGTCTTTA TGGAACCCGG TACGGGGTAT TTAAGGGCCA TAGTTGGCGG GCGCGAGCAC
ACGCACCAAA GGGCACTGAA CCGTGCTACC CAGTATCAGA TTCTTTCCAA TGGCAGCAAA
ATAGGTCGTC AACCCGGTTC TTCCATTAAA CCTATTGTTG CCTACGGACC TGCCGTTGAA
TACAAAGGTA TGGGTCCTGC TTCGGTCATT GATGATATCC CAACCTCCTT TGGCAATTAC
AGTCCAAAGA ACTCGGGCGG TGGTTTCAGA GGATTGATTA CCATGCGGCA GGCCCTAACT
AGCTCCGTAA ATATTGTGGC AGTTAAGCTT TTAAACTCCG TCGGTATTAG TCAAGCTGTG
AAATTTGCCC AGGGATTAGG AATAACTACT CTGGATGCCA ATCGGGATGG TCTTGCCATG
GCCCTGGGAG GCGTTAGCAG CGGGGTTGTA CCCTTAGATA TGGTAGGAGC CTATGGTGCC
TTTGCCAACC AAGGTATTTA TGTCAAACCC CATGCAATTA TTCGCGTAGA GCGTTTTGAT
GGGTCCATTG TGGAGGAATT TAAACCAGAA CGCAGACAAG CCATGAAGGC TACCACCGCT
TACTTAATTA CAGACATGCT GCGATCCGCT GTGCAATCAG GTACTGGCAG TCGGGCAAAC
CTTGGAGCAA GGCCCGTTGC AGGTAAAACC GGTACCACCG ATGAAGGTAA GGATATCTGG
TTTGTGGGTT ACACTCCTGA ACTGGTAGGG GCAGTTTGGA TCGGCCATGA CTTGCCAACA
AGAATGCCCC AGGCCTACGG CGGCATTTAC CCTGCGATGA TCTGGCGTGA GGTTATGAGC
AAGTCCCTGG CAGATGTACC AGTTCGCCCC TTTACAAAGC CCTCGGGGAT TGTTTACGCC
ACTGTGGATA GTAAATCCGG TCTTTTGCCC GGACCTAATA CACCATCGGA TCATATGGTA
CACGATATGT TTGCCCAAGG TACCATTCCC ACTAAGGTTG ATGATTTACA TCAAATTATG
GAAGTTTGTG CCACCACCGG AGAACTACCA AATGATTATT GTACAGACCG CATAACCAAG
GTGGTCATAA AAACACCTTA TACAGTCCCT CCAAATGTAG CAGATTTTGC ACTGAGGGCA
CCCGTAAAAA CGTGTTCTCT CCATACTGAG AACGGCATTG ACCCGGCTGT GGCAGAGAAG
TATAAACTGA CAATTCCGGA TAGCCCAGAA AATCAGGAAA TGAATAACGG TAATCAAGAA
GGAACCAACA CCGTAACTCC CAAACCAAAT GAAGGAGATA ATTGGTTGCC AGGAACCACT
GGTTCCAATA CTAACGAAAG TGAAGCTAAA AAAAAATTTC GTAAAGCAGC CAAGGTAAAA
GAAACCTACC AACGAATTAT TGAATAA
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| Protein sequence | MAKRKSRRLR PGRLILLITI LIVTIGGLAS LGFFAYAMSD MPAFNPQALE NMVPTSIYDK
DGNLVTRIGT ENREPIQLSE VPATVKDAVL ATEDEHFYDH HGINFRSLGR AVFRNVAAGE
IREGFSTITM QLVKLSYLSP ERSMKRKMQE VILTLQMERH FMKDEIFEMY LNKIYFGQGA
YGIQSAAQIY FGKDLKTDEL TLEEAAFLAG IPQAPSAYSR YLDSGKSLDD GENSEQDKKK
LEEQHQKDYD LTLNRRNIVL LRMKEAGKIT EEERQAAASK PLPDGTKMQA TRYPYPYFID
YVTEKLVQKY GPDMVYKGGL KVYTTLDPKI QKTVELAMAN AKNFPNYKPD KNGLPQPQGA
AVFMEPGTGY LRAIVGGREH THQRALNRAT QYQILSNGSK IGRQPGSSIK PIVAYGPAVE
YKGMGPASVI DDIPTSFGNY SPKNSGGGFR GLITMRQALT SSVNIVAVKL LNSVGISQAV
KFAQGLGITT LDANRDGLAM ALGGVSSGVV PLDMVGAYGA FANQGIYVKP HAIIRVERFD
GSIVEEFKPE RRQAMKATTA YLITDMLRSA VQSGTGSRAN LGARPVAGKT GTTDEGKDIW
FVGYTPELVG AVWIGHDLPT RMPQAYGGIY PAMIWREVMS KSLADVPVRP FTKPSGIVYA
TVDSKSGLLP GPNTPSDHMV HDMFAQGTIP TKVDDLHQIM EVCATTGELP NDYCTDRITK
VVIKTPYTVP PNVADFALRA PVKTCSLHTE NGIDPAVAEK YKLTIPDSPE NQEMNNGNQE
GTNTVTPKPN EGDNWLPGTT GSNTNESEAK KKFRKAAKVK ETYQRIIE
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