| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1552 |
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| Symbol | |
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| ID | 4956683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1685069 |
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| End bp | 1687984 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640180725 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001112905 |
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| Protein GI | 134299409 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2206] HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACACTAA GTAAAAAGAC AAAACTTATT ATCTATATGA CATTTATAAT CTTTATCATC
GTAATATTTG GCACTTCAGA ATTTATTGTG CGTAAAAATC TCAGTGAACT GGAAGAAAAA
GTAGTTAATC AGAATATTGA ACGGGTTCGA AATGTTTTAT CAGAAGATAT TTCTAGTTTA
AACAAATTAG CTATGGACTG GGCTTCCTGG GATGATACCT ACTCCTTTAT ACAGGATGCC
AATAAAGCAT ATATTCAGTC AAATCTTGAC GATACAACCT TTATTGATCA AAGGCTTAAC
ATTGTACTTT TTATTAACTC TTCAGGTCGT ATCGTTTACG GTAAGGGATT TGATTTAGAA
GATGATAAGG AAGTATCTGT TCCAAACAGT ATCAAGCAGT ATGTAAGTGC CAATAGTCTT
CTTACGCGCC ACTCTACTAT TGAGAATGGT ATATCAGGAG TTATACTTTT ACCCGAAGGC
CCCATGCTTA TTTCCTCGCG TCCAATTTTA ACTACTAAAA ATAAAGGTCC CATCCGAGGC
ATGTTGCTTA TGGGACGCTA CCTAGATACA AAACAAATTA AACATTTATC TCAAATAGTT
GATCTGTCAC TTACAATACG AGACATAAAA CCTACGGAGA TGCCACCTGA TTTTCAAGAG
GTACTTCCTT TGTTAAAAGA AAACCCTGTT TTTGTTAGCC CGCTAAACTC AGACTTTATT
GCTGGTTACA CTCTGCTGAA TGATGTCTTT GGTAAACCAA GTCTTATGTT AAAAGTAAGC
ATGCCAAGGG AAAACTATCG GACAGGCCAG GAAGCTATGT TTTATGTGTT GATATTACTT
GTGGTTACTG GTTTTCTAGT TAGCAGGTTC ATTCAGCATG TTTTAGACAA GGTAATCCTC
TCCCGACTCA CTAAGCTCAG TGTCAGTGTT GATAGTATCG GGGAAAATGG CAATCTTTCT
GGCAGGGTAC CTATGATGAA GGGTCAGGAT GAATTTTCTA ATCTAGCCGA TAACATTAAT
GGGATGTTGG CAGCATTGGA GCAATCCCAC AAGAGTGCAA AGCGTTATCG TAAGCTGGTG
AATAAAATGT CTACTGCTCA CCAGCAACTT CAGAATATTA TAGAATTTTT GCCTGACGCA
ACCTTTGTTA TCGATAATGA CAAAAAAGTA ATAGCTTGGA ATTTGGCTAT AGAAAAGATA
ACAGGAATAA ACAAGAAGGA TATTATCGGG AAAGGTGATT ATGCCTATTC AGTACCTCTT
TATGGCAAGC AGATACCAAT GCTGATTGAT CTTATTGGTT CCGAGGACAG GGAAGCAGAA
GGAAAATACG AATACGTAAA AAGAAAAGGA AATACCATGT TTGCTGAAGT CTTTGCTCCA
TCTTTCTTTG GGGGTAAAGG AGCCTTTCTT TGGGGGACTG CTTCACCACT TTACGACACT
AAAGGGAATT TGGTTGGTGC TATAGAATCA ATCCGAGATA TTACTGAACG CAAGAAGATA
GAAAAGGAAT TAAATTTACA AAAGGCCTAT TTTGAGCAGC TTTTTAAGAA TTCACCGGCA
GGGATTGTTA TGCTGGACAA CTCGGATAGG ATTGTGAAGA TCAATAGAGG ATTTGAAAAA
CTTTTTCAGT ATTCAATAAG TGAAGTAAAG GGTTGTTATA TAAATCAAGT TATTATTCCA
GAAAAACTCC TTGAAGAAGC ATCCATTTTA TCTAATGTTG TACTGACAGG GGAAATTTGT
CAAAAAGAGA CAATTAGAAA GCGCAAAGAT GGTAGCCTGG TAGATGTTCA TATACTTGGC
TACCCTATTC TAGTTAATAA TCAACAAGTT GGAATATATA TTATATATAC TGATATAACT
GAGCGTAAGC AAGATGAAAA ACGATTAAAA CATATAAGTT TGCATGATGC TCTCACTGGG
CTGTATAACC GTGCTTATTT TGAACAAGAA ATGACTCGCC TGGAGAAGGG GCGTAATAAT
TCGGTGGGGA TCATTATGTG TGATGTGGAT GGCCTTAAAC TCGTAAACGA TACCCTTGGT
CACAATCGTG GTGATGAGTT GCTGTTGGCA GCAACGGATG TAATTCGTGG ATCTTTCCGC
CAAAGCGATA TGGTGGCTAG GATTGGGGGC GATGAATTTG CCATACTTCT CACAAACAGC
GACAGTACGG AAGTAGAAAG AGCTGCCCAG AGAATTAAAG ATGCCATCGC AAAGTACAAC
AAGGGAAACC CGAAATTGCC CCTGAATATA TCCATAGGCT TTGCTGTCAG CAATGATTTA
TCTTTACGAA TGTGGGACCT TTTCAGGGAA GCAGATAACA ACATGTACCG GGAAAAACTT
TATCACAGCC AAAGTGCCAG AAGCACCATT GTACAGACTC TGATGAAGGC TTTAGAAGCA
AGGGATTTTA TTACCGAGGG TCATGCTGAT CGCTTACAAG ACCTAGTGGT AAGAGTAGCT
AGGGCCATAG GGCTGTCCGA GAACAAAGTA ACTGACTTGC GTTTGCTTGC CAAGTTCCAT
GATATTGGCA AGGTGGGCAT ACCAGACCGT ATTTTATTTA GCGAGGGCCC CCTAACCCCG
GAGGAATTTA TTGAAATGCA GCGTCATTGT GAGATAGGCT ACCGTATTGC CCAGTCTGCT
CCTGACCTTA TCCCGATTGC TGACTGGATT CTCAAACACC ATGAGTGGTG GAATGGAAAG
GGTTACCCCT TTGGCCTTAA GGAAAAAGAG ATTCCCCTGG AGTGCCGTAT TTTAACCATT
GCCGATGCAT ATGATGCCAT GACCAGTGAA CGTCCTTACC GGAAGGCTAT GTCCCATGAG
GAAGCGGTGG TTGAACTCAG AAAATTCGCT GGTGTTCAGT TTGACCCTCA ACTGGTAGGT
AAGTTTATAG AGGTATTTAA TACCAAAAAG ACATAG
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| Protein sequence | MTLSKKTKLI IYMTFIIFII VIFGTSEFIV RKNLSELEEK VVNQNIERVR NVLSEDISSL
NKLAMDWASW DDTYSFIQDA NKAYIQSNLD DTTFIDQRLN IVLFINSSGR IVYGKGFDLE
DDKEVSVPNS IKQYVSANSL LTRHSTIENG ISGVILLPEG PMLISSRPIL TTKNKGPIRG
MLLMGRYLDT KQIKHLSQIV DLSLTIRDIK PTEMPPDFQE VLPLLKENPV FVSPLNSDFI
AGYTLLNDVF GKPSLMLKVS MPRENYRTGQ EAMFYVLILL VVTGFLVSRF IQHVLDKVIL
SRLTKLSVSV DSIGENGNLS GRVPMMKGQD EFSNLADNIN GMLAALEQSH KSAKRYRKLV
NKMSTAHQQL QNIIEFLPDA TFVIDNDKKV IAWNLAIEKI TGINKKDIIG KGDYAYSVPL
YGKQIPMLID LIGSEDREAE GKYEYVKRKG NTMFAEVFAP SFFGGKGAFL WGTASPLYDT
KGNLVGAIES IRDITERKKI EKELNLQKAY FEQLFKNSPA GIVMLDNSDR IVKINRGFEK
LFQYSISEVK GCYINQVIIP EKLLEEASIL SNVVLTGEIC QKETIRKRKD GSLVDVHILG
YPILVNNQQV GIYIIYTDIT ERKQDEKRLK HISLHDALTG LYNRAYFEQE MTRLEKGRNN
SVGIIMCDVD GLKLVNDTLG HNRGDELLLA ATDVIRGSFR QSDMVARIGG DEFAILLTNS
DSTEVERAAQ RIKDAIAKYN KGNPKLPLNI SIGFAVSNDL SLRMWDLFRE ADNNMYREKL
YHSQSARSTI VQTLMKALEA RDFITEGHAD RLQDLVVRVA RAIGLSENKV TDLRLLAKFH
DIGKVGIPDR ILFSEGPLTP EEFIEMQRHC EIGYRIAQSA PDLIPIADWI LKHHEWWNGK
GYPFGLKEKE IPLECRILTI ADAYDAMTSE RPYRKAMSHE EAVVELRKFA GVQFDPQLVG
KFIEVFNTKK T
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